Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060177.seq
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77800.1 68414.m09059 PHD finger family protein contains Pfam...    31   0.83 
At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containi...    30   1.1  
At1g69870.1 68414.m08041 proton-dependent oligopeptide transport...    28   4.4  
At5g14270.1 68418.m01669 DNA-binding bromodomain-containing prot...    28   5.8  
At4g17030.1 68417.m02569 expansin-related identical to SWISS-PRO...    28   5.8  
At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit, ...    28   5.8  

>At1g77800.1 68414.m09059 PHD finger family protein contains Pfam
            domain, PF00628: PHD-finger
          Length = 1423

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
 Frame = -1

Query: 436  SHEMFKAAQNNLQAAQHVLRNFSFKIVQREYLPSGLNAHADGN-HRVDLLQHFTDVIVDA 260
            SHE+  A +++     HV   FS   V  +   + +  H D N    + +Q   D+ +D+
Sbjct: 1228 SHEILAAKRDHAARPLHVRNPFSPPEVSSDSATTSIKGHPDSNISGSEAIQRSDDITIDS 1287

Query: 259  RRSPVLNQWERLLMESPASIILTASSKVQLPIFKRA*RSRPALCTTYRLRTILIGIPELY 80
              +        LLM++      +A+SK +   F R    R  L      R   I  P + 
Sbjct: 1288 TVTDKRRGKGPLLMDTDQKTDDSATSKSR---FSRKLTERQILSGKTVPRKHCIVSPSVS 1344

Query: 79   GDGD 68
             DGD
Sbjct: 1345 EDGD 1348


>At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 500

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 7   EIIYNYYAKYNEVHDVYGESYHH-HRIVQEYLSESYVNDMSCIERDVT 147
           + ++ +YA+  + H   G+ Y   +++V E     YV D SCI +D++
Sbjct: 375 QTVHIFYAE-GKTHPDEGDIYFELYKLVSEMKKSGYVPDTSCIHQDIS 421


>At1g69870.1 68414.m08041 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 620

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 486 ASLLGLNTLAMCSSFPFL--MKCSKRPKIICKQPN 388
           A+LLGL T+ + +SFP L    C+ +  + C  PN
Sbjct: 132 ATLLGLITITLTASFPQLHPASCNSQDPLSCGGPN 166


>At5g14270.1 68418.m01669 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 688

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/69 (23%), Positives = 33/69 (47%)
 Frame = +2

Query: 170 QLHL*RSGQDDRRGRFHQKPFPLVQHRRTTGIDDNVRKVLEQIDAVVPVSVRVQTGRQIF 349
           ++H   S  D  + +    P P+ + R+TT +D     V++    V+    R++ G+ + 
Sbjct: 246 KVHTEPSNLDAHKEKHIVIPVPMAKKRKTTAVD--CENVVDPAKRVMTDEDRLKLGKDLE 303

Query: 350 SLNNFEREI 376
           SL  F  ++
Sbjct: 304 SLTEFPAQL 312


>At4g17030.1 68417.m02569 expansin-related identical to
           SWISS-PROT:O23547 expansin-related protein 1 precursor
           (At-EXPR1)[Arabidopsis thaliana]; related to expansins,
           http://www.bio.psu.edu/expansins/
          Length = 250

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 25  YAKYNEVHDVYGESYHHHRIVQEYLSESYVNDMSCIE 135
           YA YN V+ ++ +SY+ H +    L    VND+  +E
Sbjct: 146 YAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVE 182


>At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit,
           putative similar to gi:2827141 cellulose synthase
           catalytic subunit, Arabidopsis thaliana (Ath-A)
          Length = 1088

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -1

Query: 514 HKFIVPPSDSVAIRVEHVGDVQQFSVSHEMFKAAQNNL 401
           H  IVPPS  +  RV HV     F+  H      Q +L
Sbjct: 169 HALIVPPSTGLGNRVHHVPFTDSFASIHTRPMVPQKDL 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,409,066
Number of Sequences: 28952
Number of extensions: 272611
Number of successful extensions: 781
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)