Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060176.seq
(686 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-l... 140 3e-32
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 56 6e-07
UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red ... 50 4e-05
UniRef50_Q8UZB5 Cluster: Coat protein; n=1; Grapevine fleck viru... 49 1e-04
UniRef50_P35927 Cluster: Coat protein; n=2; Erysimum latent viru... 44 0.003
UniRef50_P20124 Cluster: Coat protein; n=10; Tymovirus|Rep: Coat... 42 0.011
UniRef50_O89519 Cluster: Virion protein; n=2; Tymovirus|Rep: Vir... 40 0.075
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 36 0.70
UniRef50_O89518 Cluster: Virion protein; n=1; Wild cucumber mosa... 36 0.93
UniRef50_Q6CCA2 Cluster: Similarity; n=1; Yarrowia lipolytica|Re... 36 0.93
UniRef50_Q4Q0Y2 Cluster: Putative uncharacterized protein; n=3; ... 34 2.8
UniRef50_A7SZT6 Cluster: Predicted protein; n=2; Nematostella ve... 34 3.7
UniRef50_A7T506 Cluster: Predicted protein; n=1; Nematostella ve... 33 4.9
UniRef50_Q8TFG4 Cluster: Uncharacterized protein PB18E9.04c prec... 33 6.5
UniRef50_UPI00015B5738 Cluster: PREDICTED: similar to synaptic r... 33 8.6
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 33 8.6
UniRef50_Q0LKT7 Cluster: Cytochrome b/b6-like; n=1; Herpetosipho... 33 8.6
>UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-like
latent virus|Rep: Coat protein - Bombyx mori Macula-like
latent virus
Length = 237
Score = 140 bits (339), Expect = 3e-32
Identities = 72/99 (72%), Positives = 74/99 (74%)
Frame = +3
Query: 309 YLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATL 488
YLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEG NVLATPSS+RIT+GGLALMHQATL
Sbjct: 115 YLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGFNVLATPSSARITMGGLALMHQATL 174
Query: 489 PCDLGYITRSSNPRFHTPTTPDLTSISINPLTPVLEGVR 605
PCDLGYI P L VLEGVR
Sbjct: 175 PCDLGYINPIIKSPIPYTNHPRLNIHFHQSADAVLEGVR 213
Score = 94.7 bits (225), Expect = 2e-18
Identities = 50/83 (60%), Positives = 52/83 (62%)
Frame = +2
Query: 5 TSIPSLVNAFSSSKPPQTDNPSARSMDMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 184
++IPSLVNAFSSSKPPQTDNPSARSMDMQ
Sbjct: 13 SAIPSLVNAFSSSKPPQTDNPSARSMDMQPLPSSDSVVLSSQPLPPAPPPPLGSSLGRSP 72
Query: 185 QRLIIPFQRLYFDLTGTETKSNS 253
QRLIIPFQRLYFDLTGTETKSNS
Sbjct: 73 QRLIIPFQRLYFDLTGTETKSNS 95
Score = 39.9 bits (89), Expect = 0.057
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = +1
Query: 256 TVQSLPNVSSIIKGYRDGILSILKLSFF 339
TVQSLPNVSSIIKGYRD L L+ F
Sbjct: 97 TVQSLPNVSSIIKGYRDAYLVNLEAVVF 124
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 56.4 bits (130), Expect = 6e-07
Identities = 30/89 (33%), Positives = 44/89 (49%)
Frame = +3
Query: 312 LVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLP 491
L L+A+V P+A S + P+T+DL W+T +V + +L +R IGG L H L
Sbjct: 1858 LAELKAIVCPTAASFQSPITLDLVWSTNNVIFTDLQILQVYGGTRFAIGGPLLSHTYELR 1917
Query: 492 CDLGYITRSSNPRFHTPTTPDLTSISINP 578
DL Y+ TP LT + +P
Sbjct: 1918 ADLSYLNPVIKDSVSYVDTPKLTLNASDP 1946
>UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red
Globe virus|Rep: 25kDa coat protein - Grapevine Red
Globe virus
Length = 235
Score = 50.4 bits (115), Expect = 4e-05
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 312 LVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGG-LALMHQATL 488
L +LE VFP PS P++ D W ++ V++ G +L+T +R+T GG + + L
Sbjct: 110 LQSLELTVFPKNPSYTYPMSFDAHWHSSSVSITGSQILSTYGGTRVTFGGPITSSNPIIL 169
Query: 489 PCDLGYITRSSNP 527
P DL RS+NP
Sbjct: 170 PADL----RSTNP 178
Score = 40.7 bits (91), Expect = 0.033
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 6/136 (4%)
Frame = +2
Query: 197 IPFQRLYFDLTGTETKSNSALCNHYRTSPPSSKATATVXXXXXXXXXXXXXXXQNTSHS* 376
+PFQ +++DLT ET S + PP T+ +N S++
Sbjct: 71 LPFQFIFYDLTNAETGFTSL---DLASKPPFLSLTSPYAYAVLQSLELTVFP-KNPSYTY 126
Query: 377 PLLDYC*RHS*RSQCAGHPFILSHYYWR---SRPYASSYPSLRS---RLHNPIIKSPIPY 538
P+ HS G + ++ R P SS P + R NP++K + Y
Sbjct: 127 PMSFDAHWHSSSVSITGSQILSTYGGTRVTFGGPITSSNPIILPADLRSTNPVVKDTVSY 186
Query: 539 TNHPRLNIHFHQSPDA 586
N P+L + FH++ DA
Sbjct: 187 NNTPKLTVAFHKNTDA 202
>UniRef50_Q8UZB5 Cluster: Coat protein; n=1; Grapevine fleck
virus|Rep: Coat protein - Grapevine fleck virus
Length = 230
Score = 48.8 bits (111), Expect = 1e-04
Identities = 36/115 (31%), Positives = 49/115 (42%)
Frame = +3
Query: 216 TSILLAPKPNRTVHCAITTERLLHHQRLPRRYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 395
TS+ +A +P +T R H RL +LEA V P+A S P TVDLCWT
Sbjct: 85 TSLSIASRPE-----VVTVARPYRHARL-----TSLEAFVQPTASSATYPQTVDLCWTID 134
Query: 396 DVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYITRSSNPRFHTPTTPDLT 560
VT +L+ + RI G + LP +L + + P LT
Sbjct: 135 SVTPARSEILSVFGAQRIAWGSVHFSAPILLPAELSSLNPTIKDSVTYTDCPRLT 189
>UniRef50_P35927 Cluster: Coat protein; n=2; Erysimum latent
virus|Rep: Coat protein - Erysimum latent virus (ELV)
Length = 202
Score = 44.0 bits (99), Expect = 0.003
Identities = 22/53 (41%), Positives = 28/53 (52%)
Frame = +3
Query: 303 RRYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGG 461
R L L AVV PSA S+ P+TV L W A T +L T +I++GG
Sbjct: 80 RAQLTQLHAVVSPSAVSIGHPLTVQLIWVPASSTTTSSQILGTYGGQQISVGG 132
>UniRef50_P20124 Cluster: Coat protein; n=10; Tymovirus|Rep: Coat
protein - Ononis yellow mosaic virus
Length = 192
Score = 42.3 bits (95), Expect = 0.011
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +3
Query: 312 LVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGG 461
+V EAV+FP++ S K PV DL W ++ + +L T +R T+GG
Sbjct: 72 IVECEAVLFPNSTSSKNPVHCDLIWVPSNSSASPKTILQTYGGNRFTVGG 121
>UniRef50_O89519 Cluster: Virion protein; n=2; Tymovirus|Rep: Virion
protein - Dulcamara mottle virus
Length = 188
Score = 39.5 bits (88), Expect = 0.075
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 303 RRYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQA 482
R LV L + P+ ++ PVTVD+ W A+ T +L+ R IGG Q
Sbjct: 69 RAKLVELFLTITPTQLAIDNPVTVDVVWVPANSTATPSKILSVYGGQRFLIGGTLTTSQV 128
Query: 483 -TLPCDL 500
+PC+L
Sbjct: 129 IRVPCNL 135
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 36.3 bits (80), Expect = 0.70
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 312 LVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQAT-L 488
L ++E V P A + P++V WT A ++ + + T+GG LM T L
Sbjct: 2072 LTSVELEVCPLAAAFSKPISVSAVWTIASISPASASETSYYGGRLFTVGGPVLMSSTTHL 2131
Query: 489 PCDL 500
P DL
Sbjct: 2132 PADL 2135
>UniRef50_O89518 Cluster: Virion protein; n=1; Wild cucumber mosaic
virus|Rep: Virion protein - Wild cucumber mosaic virus
Length = 188
Score = 35.9 bits (79), Expect = 0.93
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 312 LVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGG 461
L++ +A++ P + +P+TVDL W +A+ ++L S T GG
Sbjct: 72 LLSAKAIITPFDGVVSLPITVDLAWVSANSPASPTDILKIYGGSSYTFGG 121
>UniRef50_Q6CCA2 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
Similarity - Yarrowia lipolytica (Candida lipolytica)
Length = 911
Score = 35.9 bits (79), Expect = 0.93
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Frame = +3
Query: 327 AVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQA---TLPCD 497
A++ P+A +L +P DL T D+T T + + +T ALM A T+P
Sbjct: 551 ALMVPTATALMVPTATDLTTTATDLTTTATATDLTTTVTDLTTTATALMETATALTVPTA 610
Query: 498 LGYITRSSNPRFHTPTTPDLTSISINPLT 584
+T + PT DLT ++ LT
Sbjct: 611 TD-LTVPTATDLTVPTATDLTVPTVTDLT 638
>UniRef50_Q4Q0Y2 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 2193
Score = 34.3 bits (75), Expect = 2.8
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Frame = +3
Query: 195 SSLFNACTSILLAPKPNRTVHCAITTERLLHHQRLPRRYLVNLEAVVFPSAPSLKIPVTV 374
S + + +S A P C I+ ERL+HH+R R+Y + A P + S +
Sbjct: 122 SGISSGTSSSFKARLPVLLGRCYISIERLVHHERKRRKYYL---ATPLPPS-SATVTAGS 177
Query: 375 DLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDL-GYITRS 518
+ C T A V + +P++ +G L Q LP + G IT S
Sbjct: 178 NGCATAASVAANAIAAGTSPTTMVSDVGSSFL--QQALPTGIAGTITIS 224
>UniRef50_A7SZT6 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 148
Score = 33.9 bits (74), Expect = 3.7
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = +2
Query: 428 HPFILSHYYWRSRPYASSYPSLRSRLHN-PIIKSPIPYTNHPRLNIHFHQSPDAXTRRSS 604
HP ++SH S P S+PSL S L N P + + P TN P L ++ P ++
Sbjct: 79 HPSLISHPSLISHPSLISHPSLESPLSNKPPLTNKPPLTNKPPLT---NKPP-----LTN 130
Query: 605 RPGL--KPPLSSE 637
+P L KPPLS++
Sbjct: 131 KPPLSNKPPLSNK 143
>UniRef50_A7T506 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 132
Score = 33.5 bits (73), Expect = 4.9
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 428 HPFILSHYYWRSRPYASSYPSLRS-RLHNPIIKSPIPYTNHPRLNIHFHQSPDAXTRRSS 604
HPF Y +R RP +PS + R H+ P PYT PR H SP T R
Sbjct: 49 HPF---PYTYRPRPTLKPHPSPYTYRPHSTFEPHPSPYTYRPRSTFKPHPSP--YTYR-P 102
Query: 605 RPGLKP 622
RP +P
Sbjct: 103 RPSFEP 108
>UniRef50_Q8TFG4 Cluster: Uncharacterized protein PB18E9.04c
precursor; n=1; Schizosaccharomyces pombe|Rep:
Uncharacterized protein PB18E9.04c precursor -
Schizosaccharomyces pombe (Fission yeast)
Length = 800
Score = 33.1 bits (72), Expect = 6.5
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 2/121 (1%)
Frame = +3
Query: 216 TSILLAPKPNRTVHCAITTERLLHHQRLPRRYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 395
TS + P T +C TT + + P + + + S P PVT C T+
Sbjct: 482 TSTPVTSTPLTTTNC--TTSTSVPYTSTP---VTSSNYTISSSTPVTSTPVTTTNCTTST 536
Query: 396 DVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYITRSSNPRFHTP--TTPDLTSIS 569
V V +TP ++ ++ + +T Y SS P TP TT TS S
Sbjct: 537 SVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTS 596
Query: 570 I 572
+
Sbjct: 597 V 597
>UniRef50_UPI00015B5738 Cluster: PREDICTED: similar to synaptic ras
gtpase activating protein, syngap; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to synaptic ras
gtpase activating protein, syngap - Nasonia vitripennis
Length = 1551
Score = 32.7 bits (71), Expect = 8.6
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = -1
Query: 473 HKGETANSNARG*RGGQHIDSFNCDVSSSPTKVNCDWYFEARGGRKNDSFKIDKIPSR*P 294
H + A S + R G+H NC+ + + KV D +A G++ND +D+ R
Sbjct: 254 HSTKLARSTSALVRSGRHASIDNCNTTVTSVKVKND---DADSGQENDEPMLDEQVVRNE 310
Query: 293 LMMEETFGSDCTVH 252
EET +D VH
Sbjct: 311 TRFEET-DTDAGVH 323
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 32.7 bits (71), Expect = 8.6
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 312 LVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQAT-L 488
L++ E P A + P++V WT A + L +T+GG LM T +
Sbjct: 1947 LISAELEFAPLAAAFAKPISVTAVWTIASIAPATTTELQYYGGRLLTLGGPVLMGSVTRI 2006
Query: 489 PCDL 500
P DL
Sbjct: 2007 PADL 2010
>UniRef50_Q0LKT7 Cluster: Cytochrome b/b6-like; n=1; Herpetosiphon
aurantiacus ATCC 23779|Rep: Cytochrome b/b6-like -
Herpetosiphon aurantiacus ATCC 23779
Length = 562
Score = 32.7 bits (71), Expect = 8.6
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 300 PRRYLVNLEAVVFPSAPS--LKIPVTVDLCWTTADVTVEGVNVLATPSSSRIT 452
P Y + +A F +A L+ VT+D+ WTTA EG N++ TP SR T
Sbjct: 491 PWLYQQDTDAAGFSTAVDGILQKRVTLDMEWTTAGYDAEG-NLVETPEKSRYT 542
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,933,557
Number of Sequences: 1657284
Number of extensions: 13759892
Number of successful extensions: 40443
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 38508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40386
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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