Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060176.seq
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.039
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.1
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 27 1.9
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 1.9
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 27 2.5
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 26 4.4
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 5.9
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 5.9
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po... 26 5.9
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy... 25 7.8
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 25 7.8
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 33.1 bits (72), Expect = 0.039
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 2/121 (1%)
Frame = +3
Query: 216 TSILLAPKPNRTVHCAITTERLLHHQRLPRRYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 395
TS + P T +C TT + + P + + + S P PVT C T+
Sbjct: 482 TSTPVTSTPLTTTNC--TTSTSVPYTSTP---VTSSNYTISSSTPVTSTPVTTTNCTTST 536
Query: 396 DVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYITRSSNPRFHTP--TTPDLTSIS 569
V V +TP ++ ++ + +T Y SS P TP TT TS S
Sbjct: 537 SVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTS 596
Query: 570 I 572
+
Sbjct: 597 V 597
Score = 31.9 bits (69), Expect = 0.089
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +3
Query: 327 AVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGY 506
+V + S P P+T C T+ + V +TP ++ ++ + +T Y
Sbjct: 455 SVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNY 514
Query: 507 ITRSSNPRFHTP--TTPDLTSISI 572
SS P TP TT TS S+
Sbjct: 515 TISSSTPVTSTPVTTTNCTTSTSV 538
Score = 25.4 bits (53), Expect = 7.8
Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 5/137 (3%)
Frame = +3
Query: 195 SSLFNACTSILLAPKPNRTVHCAITTERLLHHQRLPRRYLVNLEAVVFPSAPSLKIPVTV 374
S+ + TS + P N T T L +V + S P P+
Sbjct: 388 STSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLAT 447
Query: 375 DLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQAT----LPCDLGYITRSSN-PRFHT 539
C T+ V V +TP ++ ++ + +T P T S++ P T
Sbjct: 448 TNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTST 507
Query: 540 PTTPDLTSISINPLTPV 590
P T ++ +I+ TPV
Sbjct: 508 PVTS--SNYTISSSTPV 522
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 414 VNVLATPSSSRITIGGLALMHQATLPCDLGY--ITRSSNPRFHTPTTPDLTSISINPLTP 587
V +++ SSS + +G + H ++LP +G T + H+ TP + S P P
Sbjct: 166 VATISSSSSSHLDMGAIHPPHHSSLPPHMGVDPSTMADAHNAHSSLTPPQSGYSSMPSLP 225
Query: 588 VLE 596
L+
Sbjct: 226 YLQ 228
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 513 RSSNPRFHTPTTPDLTSISINPLTPVLEGVRGRG*SLRCHQRVPS 647
R+ +P+F +P ++S + NP L + L+ H +PS
Sbjct: 198 RNGDPKFRFSVSPWISSSNFNPYEASLANFQSDNCKLKSHNSLPS 242
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 472 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 353
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 540 PTTPDLTSISINPLTPVLEGVR 605
P+ P+ TS S PLTP+LE ++
Sbjct: 144 PSNPNATSSSPPPLTPILELIK 165
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +3
Query: 228 LAPKPNRTVHCAITTERLLHHQRLPRRYLVNLEAVVFPSAPSLKIPVTVDLC 383
+ P P+ T+ A + L +HQ P+ + +++ + S P +P +D C
Sbjct: 518 VVPSPSLTIPMATEPQILEYHQEWPQPLIQSIQQHGY-SDPRQTLPTRLDSC 568
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 457 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 323
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 270 TERLLHHQRLPRRYLVNLE 326
T LHH+R+P YL +L+
Sbjct: 285 THYFLHHRRMPNAYLTDLK 303
>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +2
Query: 497 SRLHNPIIKSPIPYTNHPRLNIHFHQSPDAXTRRSSRPGLKPPLSSEGSISGIL 658
S +HN ++ P+P++N+ + +Q P S +PP S G+ +L
Sbjct: 215 SPVHNEVMAEPLPHSNNREVTQATNQ-PKWQIHSGSDIASEPPTLSRGNSLSLL 267
>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 482
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -1
Query: 434 RGGQHIDSFNCDVSSSPTKVNCDWYFEARGGRKNDSFKIDKIPSR*PLMMEETFG 270
+GG+H + + P +V + Y+ A+ R +F+I R PL + FG
Sbjct: 13 KGGKHGEFRQESDTFGPIQVPAEKYWGAQTQRSLQNFRIGGEKERLPLPLVRAFG 67
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +2
Query: 416 QCAGHPFILSHYYWRSRPYAS--SYPSLRSRLHNPIIKSPIPYTNHPRLNIH-FHQSP 580
Q + P Y+ PY S SYPSL H+P +P+ + + +H SP
Sbjct: 143 QLSERPSSYLGYHNNLSPYRSPNSYPSLLPSTHSPHSPAPLSTMQTALMRLRTYHPSP 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,244
Number of Sequences: 5004
Number of extensions: 54554
Number of successful extensions: 194
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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