Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060176.seq
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0224 - 15842318-15843259 29 4.6
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166... 29 4.6
02_02_0640 - 12528075-12528363,12531326-12532311 29 4.6
01_05_0227 - 19512866-19514983 29 4.6
10_01_0273 - 2891910-2893459,2893554-2893665 28 6.0
08_02_1232 + 25429955-25430392,25430885-25431388,25432657-254328... 28 6.0
03_04_0192 + 18302114-18302362,18302664-18302732,18302752-183028... 28 6.0
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 28 6.0
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 28 8.0
>09_04_0224 - 15842318-15843259
Length = 313
Score = 28.7 bits (61), Expect = 4.6
Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 3/126 (2%)
Frame = +3
Query: 231 APKPNRTVHCAITTERLLHHQRLPRRYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 410
APK ++ L +R RR +V L + P+A ++ V C V +
Sbjct: 65 APKEEEKPELSLLVGVLTMPKRYERRDIVRLAYALQPAAARARVDVRFVFCRVADPVDAQ 124
Query: 411 GVNVLATPSSSRITIGGL-ALMHQATLPCDLGYITR--SSNPRFHTPTTPDLTSISINPL 581
V + A + +GG M+ L + R +S+P + T D T + + L
Sbjct: 125 LVALEAARHGDVVVLGGCEENMNHGKTHAYLSSVPRLFASSPYDYVMKTDDDTYLRVAAL 184
Query: 582 TPVLEG 599
L G
Sbjct: 185 ADELRG 190
>07_03_0909 +
22512313-22512474,22513151-22513465,22513539-22516633,
22516812-22516910,22517031-22517379
Length = 1339
Score = 28.7 bits (61), Expect = 4.6
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Frame = +3
Query: 366 VTVDLCWTTA------DVTVEGVNVLATPSSSRITIGGLALMHQATLPC---DLGYITRS 518
+T WTTA + ++G +VL TP S + ++L H T PC ++ +++ +
Sbjct: 340 ITHRFAWTTAVSETSIALVIDGSHVLVTPLSLGLMPPPMSLFH-LTFPCAVNEVSFLSYN 398
Query: 519 SNPRFHTPTTPDLTSISINPLTPVLEGVRGRG*SL 623
S + +S+ P+ E G G S+
Sbjct: 399 SKNHIAAYLSNGSLCVSVLPVADTWEEFEGSGISV 433
>02_02_0640 - 12528075-12528363,12531326-12532311
Length = 424
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +3
Query: 246 RTVHCAITTERLLHHQRLPRRYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 395
R + A T L RLPRR+L+ L FP+ PSL P+ +D TA
Sbjct: 60 RLLLSAATLLPLRRSLRLPRRHLLCL----FPTDPSLASPILLDPAAPTA 105
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 409 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 317
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>10_01_0273 - 2891910-2893459,2893554-2893665
Length = 553
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 188 RLIIPFQRLYFDLTGTETKSNSALCNHYRTSPPSSKATATV 310
R +I LY G T S+S++ TSPPSS A V
Sbjct: 100 RAVIVASALYLLSLGMLTASSSSMAAQRATSPPSSSAGGAV 140
>08_02_1232 +
25429955-25430392,25430885-25431388,25432657-25432803,
25432999-25433106,25433242-25433331
Length = 428
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 503 LHNPIIKSPIPYTNHPRLNIHFHQSPDAXTRRSSRPGL 616
L P I YTN+ +L I H+ PDA +R G+
Sbjct: 298 LWGPDITQQFLYTNNLKLIIRSHEGPDARDKRHDLLGM 335
>03_04_0192 +
18302114-18302362,18302664-18302732,18302752-18302823,
18303545-18303710,18303967-18304604
Length = 397
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 429 TPSSSRITIGGLALMHQATLPCDLGYITRSSNPRFHTPT-TPDLTSISINP 578
TP+SS+ T G A+ A +P + ++N TPT P + + NP
Sbjct: 29 TPASSKATAGAAAVGRAARIPASRSRGSATTNKAMATPTVAPSSRAKASNP 79
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 357 KIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQ 479
K+ V +D TAD+++ +N+L P G L+HQ
Sbjct: 209 KVAVMMDDMIDTADISLPNINILMKPIKLGTIAKGAELLHQ 249
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +1
Query: 235 RNQIEQCTVQSLPNVSSIIKGYRDGILSILKLSFFLPPLASKYQSQLTFVGL 390
++Q+++ + N+ +KG +D ILSILKLS+ L S+ + TF +
Sbjct: 621 KHQVKEWEAIARSNIGDSVKG-KDEILSILKLSY--KHLPSEMKQCFTFCAI 669
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,242,222
Number of Sequences: 37544
Number of extensions: 405132
Number of successful extensions: 1035
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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