Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060176.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58219| Best HMM Match : SOCS_box (HMM E-Value=2e-07)                31   0.87 
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)                    31   1.2  
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)                   30   2.0  
SB_30122| Best HMM Match : YadA (HMM E-Value=2)                        29   3.5  
SB_53178| Best HMM Match : Homeobox (HMM E-Value=2.5e-26)              28   6.2  
SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062)             28   6.2  
SB_31652| Best HMM Match : Peptidase_C2 (HMM E-Value=0)                28   8.1  
SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)                 28   8.1  

>SB_58219| Best HMM Match : SOCS_box (HMM E-Value=2e-07)
          Length = 507

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 217 LRSYWHRNQIEQCTVQSLPNVSSIIKGYRDGI 312
           LR    R  + +C   S P++S++ +GYRDG+
Sbjct: 230 LRPLVQRRHMRRCYSDSQPDLSAVSQGYRDGV 261


>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
          Length = 458

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 362 TSHS*PLLDYC*RHS*RSQCAGHPFILSHYYWRSRPY--ASSYPSLRSRLHN 511
           T +   LL YC     R   AGHPF+L  Y +  R Y   +S   LR  ++N
Sbjct: 91  TKYDIDLLGYCTEQEIRRVVAGHPFLLDGYKFDLRVYVLVTSCDPLRIFVYN 142


>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
          Length = 958

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/57 (35%), Positives = 25/57 (43%)
 Frame = +3

Query: 408 EGVNVLATPSSSRITIGGLALMHQATLPCDLGYITRSSNPRFHTPTTPDLTSISINP 578
           +G N L T S+   TI   A    A     L YI+ S+NP   T  TP+ T     P
Sbjct: 501 DGRNALPTASTCASTIYWPAYTSAAMATARLSYISPSNNPILCTIPTPNYTFAKPKP 557


>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
          Length = 408

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 342 SAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRIT 452
           S P  K+P+T     T+A+VT    +++ +PS + +T
Sbjct: 239 SRPETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 275


>SB_53178| Best HMM Match : Homeobox (HMM E-Value=2.5e-26)
          Length = 428

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 506 HNPIIKSPIPYTNHPRLNIHFHQSPDAXTRRSSRP 610
           H P+  SP+  +  PR  +++H S  A  + S++P
Sbjct: 106 HAPVPTSPVVGSGIPRQGLYYHSSISAAQKPSTQP 140


>SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062)
          Length = 282

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 473 ASSYPSLRSRLHNPIIKS-PIPYTNHPRLNIHFHQSPDAXTRRSSRPGLK 619
           +S  PSL+  +H P  KS P+P + HP L +H     +     S +P L+
Sbjct: 233 SSPQPSLQ--VHTPPFKSTPLPSSPHPSLQVHSVPFKEDAFSSSLQPSLQ 280


>SB_31652| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
          Length = 1133

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 501 GY-ITRSSNPRFHTPTTPDLTSISIN-PLTPV 590
           GY +TR  N R H PTT DL ++    PLT +
Sbjct: 654 GYPLTRIDNCRTHVPTTHDLIAVGTGYPLTRI 685


>SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)
          Length = 1472

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 348 PSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRIT 452
           P  K+P+T     T+A+VT    +++ +PS + +T
Sbjct: 816 PETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 850


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,096,541
Number of Sequences: 59808
Number of extensions: 429709
Number of successful extensions: 1287
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)