Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060176.seq
(686 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC022264-1|AAH22264.1| 498|Homo sapiens nuclear factor I/A prot... 31 5.1
AL445198-5|CAI13083.1| 532|Homo sapiens nuclear factor I/A prot... 31 5.1
AL445198-3|CAI13081.1| 509|Homo sapiens nuclear factor I/A prot... 31 5.1
AL445198-2|CAI13082.1| 487|Homo sapiens nuclear factor I/A prot... 31 5.1
AL445198-1|CAI13080.1| 498|Homo sapiens nuclear factor I/A prot... 31 5.1
AL096888-6|CAI23242.1| 532|Homo sapiens nuclear factor I/A prot... 31 5.1
AL096888-4|CAI23240.1| 509|Homo sapiens nuclear factor I/A prot... 31 5.1
AL096888-3|CAI23237.1| 487|Homo sapiens nuclear factor I/A prot... 31 5.1
AL096888-2|CAI23238.1| 380|Homo sapiens nuclear factor I/A prot... 31 5.1
AL096888-1|CAI23241.1| 498|Homo sapiens nuclear factor I/A prot... 31 5.1
AB037860-1|BAA92677.1| 561|Homo sapiens KIAA1439 protein protein. 31 5.1
>BC022264-1|AAH22264.1| 498|Homo sapiens nuclear factor I/A
protein.
Length = 498
Score = 30.7 bits (66), Expect = 5.1
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Frame = +2
Query: 458 RSRPYASSYPSLRSRLHNPIIKSPIPYTNHPRLNIHFHQS---------PDAXTRRSSRP 610
R+ P+A+ PS +PII+ P PY +HP + H ++ PDA +
Sbjct: 358 RASPHAT--PSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVG 415
Query: 611 GLKPPLSSEGSISGILTP 664
L P SS+G + P
Sbjct: 416 FLNPNGSSQGKVHNPFLP 433
>AL445198-5|CAI13083.1| 532|Homo sapiens nuclear factor I/A
protein.
Length = 532
Score = 30.7 bits (66), Expect = 5.1
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Frame = +2
Query: 458 RSRPYASSYPSLRSRLHNPIIKSPIPYTNHPRLNIHFHQS---------PDAXTRRSSRP 610
R+ P+A+ PS +PII+ P PY +HP + H ++ PDA +
Sbjct: 381 RASPHAT--PSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVG 438
Query: 611 GLKPPLSSEGSISGILTP 664
L P SS+G + P
Sbjct: 439 FLNPNGSSQGKVHNPFLP 456
>AL445198-3|CAI13081.1| 509|Homo sapiens nuclear factor I/A
protein.
Length = 509
Score = 30.7 bits (66), Expect = 5.1
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Frame = +2
Query: 458 RSRPYASSYPSLRSRLHNPIIKSPIPYTNHPRLNIHFHQS---------PDAXTRRSSRP 610
R+ P+A+ PS +PII+ P PY +HP + H ++ PDA +
Sbjct: 358 RASPHAT--PSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVG 415
Query: 611 GLKPPLSSEGSISGILTP 664
L P SS+G + P
Sbjct: 416 FLNPNGSSQGKVHNPFLP 433
>AL445198-2|CAI13082.1| 487|Homo sapiens nuclear factor I/A
protein.
Length = 487
Score = 30.7 bits (66), Expect = 5.1
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Frame = +2
Query: 458 RSRPYASSYPSLRSRLHNPIIKSPIPYTNHPRLNIHFHQS---------PDAXTRRSSRP 610
R+ P+A+ PS +PII+ P PY +HP + H ++ PDA +
Sbjct: 336 RASPHAT--PSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVG 393
Query: 611 GLKPPLSSEGSISGILTP 664
L P SS+G + P
Sbjct: 394 FLNPNGSSQGKVHNPFLP 411
>AL445198-1|CAI13080.1| 498|Homo sapiens nuclear factor I/A
protein.
Length = 498
Score = 30.7 bits (66), Expect = 5.1
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Frame = +2
Query: 458 RSRPYASSYPSLRSRLHNPIIKSPIPYTNHPRLNIHFHQS---------PDAXTRRSSRP 610
R+ P+A+ PS +PII+ P PY +HP + H ++ PDA +
Sbjct: 358 RASPHAT--PSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVG 415
Query: 611 GLKPPLSSEGSISGILTP 664
L P SS+G + P
Sbjct: 416 FLNPNGSSQGKVHNPFLP 433
>AL096888-6|CAI23242.1| 532|Homo sapiens nuclear factor I/A
protein.
Length = 532
Score = 30.7 bits (66), Expect = 5.1
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Frame = +2
Query: 458 RSRPYASSYPSLRSRLHNPIIKSPIPYTNHPRLNIHFHQS---------PDAXTRRSSRP 610
R+ P+A+ PS +PII+ P PY +HP + H ++ PDA +
Sbjct: 381 RASPHAT--PSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVG 438
Query: 611 GLKPPLSSEGSISGILTP 664
L P SS+G + P
Sbjct: 439 FLNPNGSSQGKVHNPFLP 456
>AL096888-4|CAI23240.1| 509|Homo sapiens nuclear factor I/A
protein.
Length = 509
Score = 30.7 bits (66), Expect = 5.1
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Frame = +2
Query: 458 RSRPYASSYPSLRSRLHNPIIKSPIPYTNHPRLNIHFHQS---------PDAXTRRSSRP 610
R+ P+A+ PS +PII+ P PY +HP + H ++ PDA +
Sbjct: 358 RASPHAT--PSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVG 415
Query: 611 GLKPPLSSEGSISGILTP 664
L P SS+G + P
Sbjct: 416 FLNPNGSSQGKVHNPFLP 433
>AL096888-3|CAI23237.1| 487|Homo sapiens nuclear factor I/A
protein.
Length = 487
Score = 30.7 bits (66), Expect = 5.1
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Frame = +2
Query: 458 RSRPYASSYPSLRSRLHNPIIKSPIPYTNHPRLNIHFHQS---------PDAXTRRSSRP 610
R+ P+A+ PS +PII+ P PY +HP + H ++ PDA +
Sbjct: 336 RASPHAT--PSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVG 393
Query: 611 GLKPPLSSEGSISGILTP 664
L P SS+G + P
Sbjct: 394 FLNPNGSSQGKVHNPFLP 411
>AL096888-2|CAI23238.1| 380|Homo sapiens nuclear factor I/A
protein.
Length = 380
Score = 30.7 bits (66), Expect = 5.1
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Frame = +2
Query: 458 RSRPYASSYPSLRSRLHNPIIKSPIPYTNHPRLNIHFHQS---------PDAXTRRSSRP 610
R+ P+A+ PS +PII+ P PY +HP + H ++ PDA +
Sbjct: 229 RASPHAT--PSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVG 286
Query: 611 GLKPPLSSEGSISGILTP 664
L P SS+G + P
Sbjct: 287 FLNPNGSSQGKVHNPFLP 304
>AL096888-1|CAI23241.1| 498|Homo sapiens nuclear factor I/A
protein.
Length = 498
Score = 30.7 bits (66), Expect = 5.1
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Frame = +2
Query: 458 RSRPYASSYPSLRSRLHNPIIKSPIPYTNHPRLNIHFHQS---------PDAXTRRSSRP 610
R+ P+A+ PS +PII+ P PY +HP + H ++ PDA +
Sbjct: 358 RASPHAT--PSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVG 415
Query: 611 GLKPPLSSEGSISGILTP 664
L P SS+G + P
Sbjct: 416 FLNPNGSSQGKVHNPFLP 433
>AB037860-1|BAA92677.1| 561|Homo sapiens KIAA1439 protein protein.
Length = 561
Score = 30.7 bits (66), Expect = 5.1
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Frame = +2
Query: 458 RSRPYASSYPSLRSRLHNPIIKSPIPYTNHPRLNIHFHQS---------PDAXTRRSSRP 610
R+ P+A+ PS +PII+ P PY +HP + H ++ PDA +
Sbjct: 410 RASPHAT--PSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVG 467
Query: 611 GLKPPLSSEGSISGILTP 664
L P SS+G + P
Sbjct: 468 FLNPNGSSQGKVHNPFLP 485
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,024,905
Number of Sequences: 237096
Number of extensions: 2142511
Number of successful extensions: 8803
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8803
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -