Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060176.seq
         (686 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3128|AAF46671.1|  221|Drosophila melanogaster CG15654-P...    29   4.5  
AY119546-1|AAM50200.1|  836|Drosophila melanogaster GH25858p pro...    29   7.9  
AE014297-2745|AAN13817.2|  836|Drosophila melanogaster CG4836-PA...    29   7.9  
AE014297-2744|AAN13816.2| 1214|Drosophila melanogaster CG4836-PB...    29   7.9  
AE014297-2743|AAF55731.2| 1217|Drosophila melanogaster CG4836-PC...    29   7.9  

>AE013599-3128|AAF46671.1|  221|Drosophila melanogaster CG15654-PA
           protein.
          Length = 221

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +2

Query: 512 PIIKSPIPY---TNHPRLNIHFHQSPDAXTRRSSRPGLKPPLSSEGSISG 652
           PI  +P P       PR+NIH   S  A ++ S  P  +PP +++ + +G
Sbjct: 9   PIPSTPPPSRRANRPPRINIHNLTSGSAMSQASMPPSAQPPYTAQTNFTG 58


>AY119546-1|AAM50200.1|  836|Drosophila melanogaster GH25858p
           protein.
          Length = 836

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 234 PKPNRTVHCAITTERLLHHQRLPRRYLVN 320
           PK   +  C++ T RLLH    P R+ +N
Sbjct: 711 PKIESSCQCSLCTSRLLHKAVAPARFTIN 739


>AE014297-2745|AAN13817.2|  836|Drosophila melanogaster CG4836-PA,
           isoform A protein.
          Length = 836

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 234 PKPNRTVHCAITTERLLHHQRLPRRYLVN 320
           PK   +  C++ T RLLH    P R+ +N
Sbjct: 711 PKIESSCQCSLCTSRLLHKAVAPARFTIN 739


>AE014297-2744|AAN13816.2| 1214|Drosophila melanogaster CG4836-PB,
           isoform B protein.
          Length = 1214

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 234 PKPNRTVHCAITTERLLHHQRLPRRYLVN 320
           PK   +  C++ T RLLH    P R+ +N
Sbjct: 711 PKIESSCQCSLCTSRLLHKAVAPARFTIN 739


>AE014297-2743|AAF55731.2| 1217|Drosophila melanogaster CG4836-PC,
           isoform C protein.
          Length = 1217

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 234 PKPNRTVHCAITTERLLHHQRLPRRYLVN 320
           PK   +  C++ T RLLH    P R+ +N
Sbjct: 711 PKIESSCQCSLCTSRLLHKAVAPARFTIN 739


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,912,290
Number of Sequences: 53049
Number of extensions: 642003
Number of successful extensions: 1908
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1908
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)