Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060176.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak k...    31   1.0  
U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak k...    31   1.0  
Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform b protein.
          Length = 422

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 172 GTVSSTFDHPFSTPVLRSYWHRNQ 243
           G +++ F H  S+P LR +WHR Q
Sbjct: 306 GHLNNGFHHTTSSPQLRGFWHRKQ 329


>U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform a protein.
          Length = 516

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 172 GTVSSTFDHPFSTPVLRSYWHRNQ 243
           G +++ F H  S+P LR +WHR Q
Sbjct: 400 GHLNNGFHHTTSSPQLRGFWHRKQ 423


>Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical
           protein F42G4.3a protein.
          Length = 603

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +2

Query: 464 RPYASSYPSLRSRLHNPIIKSPIPYTNHPRLNIHFHQSPDAXTR-RSSRPGLKPPLSSEG 640
           R Y ++   L        I SP  Y+N PR    FH+ P+A ++ + SR  L    S   
Sbjct: 93  RTYRANLQQLAQPKTRAEIPSPPTYSNQPRPLGDFHRDPNALSQFQQSREALLSSTSPTS 152

Query: 641 SISGI 655
           + S I
Sbjct: 153 NYSPI 157


>U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical
           protein F20D12.1a protein.
          Length = 1030

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = -1

Query: 491 GKGSLMHKGETANSNARG*RGGQHIDSFNCDVSSSPTKVNCDWYFEARGGRKNDSFKIDK 312
           G+GS   +G +   + RG   G + DS+  D+ +  T V      +  GG ++D F  +K
Sbjct: 9   GRGS---RGGSRGGSGRGRGRGGYGDSYRPDLETRETHVTYQGKVKYEGGDRHD-FNYEK 64

Query: 311 IPS 303
            P+
Sbjct: 65  TPT 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,271,688
Number of Sequences: 27780
Number of extensions: 305619
Number of successful extensions: 958
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)