Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060176.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family...    31   0.95 
At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc ...    29   2.9  
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa...    28   5.0  
At5g20610.1 68418.m02448 expressed protein                             28   6.7  
At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative si...    27   8.8  

>At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family
           protein identical to hydroxyproline-rich glycoprotein
           [Arabidopsis thaliana] gi|9293881|dbj|BAB01784
          Length = 532

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 470 YASSYPSLRSRLHNPIIKSPIPYTNHPRLNIHFHQSP 580
           Y SS+P +RS  H+P   SP  Y + P   ++ ++SP
Sbjct: 441 YVSSFPFIRSPSHSPQYASPAAYPS-PPTTVYSNRSP 476


>At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc
           finger domain-containing protein-related contains Pfam
           profiles PF03468: XS domain, weak hit to PF03470: XS
           zinc finger domain
          Length = 625

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -1

Query: 551 WGGWCMESGI**SGYVAEIAGKGSLMHKGETANSNARG*RGGQHID-SFNCDVSSSPTKV 375
           WGG     G   SG    ++G+G+   +G  AN + RG    +  D +F      S   +
Sbjct: 74  WGGQQQGRGSNVSGRGNNVSGRGNGNGRGIQANISGRGRALSRKYDNNFVAPPPVSRPPL 133

Query: 374 NCDWYFEARGG 342
              W ++ARGG
Sbjct: 134 EGGWNWQARGG 144


>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
           family protein similar to arabinogalactan protein
           [Daucus carota] GI:11322245; contains Pfam profile
           PF01190: Pollen proteins Ole e I family
          Length = 359

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +2

Query: 428 HPFILSHYYWRSRPYASSYPSLRSRLHNPIIKSPIPYTNHPRLNIHFHQSPDAXTRRSSR 607
           HP    H++    P+   +P  +S +  P+ K+P+     P +    +    A  +  ++
Sbjct: 49  HPHPPHHHH--PHPHPHPHPPAKSPVKPPV-KAPVSPPAKPPVKPPVYPPTKAPVKPPTK 105

Query: 608 PGLKPPLS 631
           P +KPP+S
Sbjct: 106 PPVKPPVS 113


>At5g20610.1 68418.m02448 expressed protein
          Length = 1164

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 657  KIPLMEPSDDNGGFNPGRELLLVXASGD*WKWMLSLG 547
            K+PLM+P    G   PG +L  V  SG  WK +  +G
Sbjct: 1115 KLPLMKPK--LGSAKPGDKLWSVSGSGSKWKELGKMG 1149


>At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative
           similar to protoporphyrinogen IX oxidase, mitochondrial
           (PPO II) from Nicotiana tabacum [SP|O24164], Glycine
           max, AB025102, Spinacia oleracea [GI:14349153]; contains
           Pfam amine oxidase, flavin-containing domain [PF015930]
          Length = 508

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +2

Query: 425 GHPFILSHYYWRSR-P-YASSYPSL 493
           G P  ++HYYWR   P Y SSY S+
Sbjct: 427 GEPVSVNHYYWRKAFPLYDSSYDSV 451


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,938,916
Number of Sequences: 28952
Number of extensions: 306177
Number of successful extensions: 854
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)