Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060175.seq
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|...    27   1.9  
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy...    27   2.6  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   4.5  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   4.5  
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb...    26   5.9  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.9  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    25   7.8  

>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 494 KYHSLSNCSKTTFDDYTCRPXMTQ 565
           KY + S C   T+  Y C+P M++
Sbjct: 96  KYGTASTCQDNTYCSYACKPGMSK 119


>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 327

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 424 STSSTEYKISDVVMTMIFLLAIGKV 498
           S + T+YKI+DVVM  + + ++G V
Sbjct: 101 SQALTKYKITDVVMDSVIISSMGNV 125


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +2

Query: 497 YHSLSNCSKTTFDDYTCRPXMTQFKRTRCWDAV 595
           YH    C+    ++ TCR   TQF     W  V
Sbjct: 608 YHVRDVCTSNAENNMTCRSPKTQFNSHLIWGLV 640


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 382 RNAARKLIHHYSLNSTS 432
           R   RKL+HH SLN+ S
Sbjct: 65  RKPTRKLVHHISLNNVS 81


>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +2

Query: 11  SSVTMSAIALYLEINKLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINF 172
           S+ ++  + L ++      + D  +Q AI+   +PL CD+ +   L+T + I F
Sbjct: 119 STTSLDQLKLAIKEKVQVWRSDASLQKAIYIYTYPLACDKGKKT-LSTSIAIEF 171


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 683 VENNVQNDDRIISTXVKVELWSKHLQ 606
           + +N+ ND+ +++  V  E W+ HL+
Sbjct: 154 IVSNLANDNTLLNRQVSTEEWNSHLR 179


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 119 LCDEHQNVQLNTDVLINFI 175
           +CD H+N   N D+L  F+
Sbjct: 387 ICDLHENTSFNIDILPGFL 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,667
Number of Sequences: 5004
Number of extensions: 45256
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)