Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060175.seq
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0386 + 3023431-3023522,3023951-3024097,3024227-3024308,302...    28   8.0  
02_04_0239 - 21191793-21191840,21192227-21193276                       28   8.0  
01_06_1604 + 38567374-38567391,38567505-38567636,38569377-385694...    28   8.0  

>12_01_0386 +
           3023431-3023522,3023951-3024097,3024227-3024308,
           3024801-3024842,3024930-3024989,3025430-3027109,
           3027239-3027340,3027461-3027604,3027704-3027829,
           3027933-3028100
          Length = 880

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -3

Query: 640 SSKSNCGRSISNRESHGVPTACPFELRHXRSARVV 536
           S+K++  + + +R  HG+P+  P+E  +   AR +
Sbjct: 170 SAKNDLSQKVQSRSLHGLPSIHPYEQCYGHDARAL 204


>02_04_0239 - 21191793-21191840,21192227-21193276
          Length = 365

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 411 LFVEQHQFYRIQNQRRGHDHDIFAGDRKSIIRC 509
           LFV   + YR++ + RG  H   A D K++I C
Sbjct: 323 LFVLGRRMYRMRRKARGLPHIKIAFDDKNLINC 355


>01_06_1604 +
           38567374-38567391,38567505-38567636,38569377-38569445,
           38569545-38569775,38570883-38571013,38571471-38571629,
           38573078-38573366
          Length = 342

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 56  KLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVARKSQNT 205
           K RLK++ P    I      ++ D   +  +N + L++ + HV    +NT
Sbjct: 145 KTRLKLESPRSWRISIDEVAVVADSDGDADVNAEQLLHLLEHVGAIGENT 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,571,387
Number of Sequences: 37544
Number of extensions: 303736
Number of successful extensions: 724
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)