Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060175.seq
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_21172| Best HMM Match : LIM (HMM E-Value=1.3)                       28   8.2  

>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2708

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
 Frame = +2

Query: 2    GTRSSVTMSAIALYLEINKLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINFIMH 181
            GT   V+   +  Y  ++K   ++  P  + +W    PL+ + +  V  N   L+ F  H
Sbjct: 1903 GTTKLVSFFVVMNYCLVSKTEKEMFTPFCVDLWRLFHPLMSEPNIAVHHNKQALLIFWYH 1962

Query: 182  VARKSQNTI--LNNNAAIASQYAAGNGASSSQRQVPPILRRV 301
            V    +  +  + +   +A+  A     SS + +V    R V
Sbjct: 1963 VCMDCEVNVAFITDTTQVANNIALNYILSSDEPEVITFNRNV 2004


>SB_21172| Best HMM Match : LIM (HMM E-Value=1.3)
          Length = 274

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 459 HVADFVFCRTGAVQR 415
           H+AD+V+CRTG   R
Sbjct: 51  HLADYVYCRTGVAHR 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,422,954
Number of Sequences: 59808
Number of extensions: 352043
Number of successful extensions: 966
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)