Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060174.seq
(662 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 157 8e-39
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 157 8e-39
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 157 8e-39
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 156 1e-38
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 155 2e-38
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 155 3e-38
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 153 8e-38
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 153 8e-38
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 153 1e-37
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 80 1e-15
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 80 1e-15
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 79 3e-15
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 79 3e-15
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 79 3e-15
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 79 3e-15
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 78 5e-15
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 61 7e-10
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 60 1e-09
At4g37190.1 68417.m05265 expressed protein 31 0.90
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 31 0.90
At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein ... 29 3.6
At1g21850.1 68414.m02735 multi-copper oxidase type I family prot... 28 4.8
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 27 8.4
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 157 bits (380), Expect = 8e-39
Identities = 76/121 (62%), Positives = 84/121 (69%)
Frame = +1
Query: 256 AILXDLEPGTMDSVRSGPFGQIXRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 435
A+L DLEPGTMDSVRSGP+GQI RPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRK
Sbjct: 63 AVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK 122
Query: 436 EAESCDCLQGFQLTHXXXXXXXXXXXXXXXPKSEKSTLTE**THXQLXHXPKVSGTVVXP 615
EAE+CDCLQGFQ+ H K + + PKVS TVV P
Sbjct: 123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEP 182
Query: 616 F 618
+
Sbjct: 183 Y 183
Score = 105 bits (252), Expect = 3e-23
Identities = 44/60 (73%), Positives = 52/60 (86%)
Frame = +2
Query: 71 MREIVHIQAGQCGNQIGAKFWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 250
MREI+HIQ GQCGNQIGAKFWE++ EHGI TG Y G++DLQLER+NVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 157 bits (380), Expect = 8e-39
Identities = 76/121 (62%), Positives = 84/121 (69%)
Frame = +1
Query: 256 AILXDLEPGTMDSVRSGPFGQIXRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 435
A+L DLEPGTMDS+RSGPFGQI RPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRK
Sbjct: 63 AVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK 122
Query: 436 EAESCDCLQGFQLTHXXXXXXXXXXXXXXXPKSEKSTLTE**THXQLXHXPKVSGTVVXP 615
EAE+CDCLQGFQ+ H K + + PKVS TVV P
Sbjct: 123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEP 182
Query: 616 F 618
+
Sbjct: 183 Y 183
Score = 108 bits (259), Expect = 4e-24
Identities = 48/60 (80%), Positives = 52/60 (86%)
Frame = +2
Query: 71 MREIVHIQAGQCGNQIGAKFWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 250
MREI+HIQ GQCGNQIGAKFWE+I EHGI TG GD+DLQLERINVY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 157 bits (380), Expect = 8e-39
Identities = 76/121 (62%), Positives = 84/121 (69%)
Frame = +1
Query: 256 AILXDLEPGTMDSVRSGPFGQIXRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 435
A+L DLEPGTMDSVRSGP+GQI RPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRK
Sbjct: 63 AVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK 122
Query: 436 EAESCDCLQGFQLTHXXXXXXXXXXXXXXXPKSEKSTLTE**THXQLXHXPKVSGTVVXP 615
EAE+CDCLQGFQ+ H K + + PKVS TVV P
Sbjct: 123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEP 182
Query: 616 F 618
+
Sbjct: 183 Y 183
Score = 105 bits (253), Expect = 2e-23
Identities = 45/60 (75%), Positives = 53/60 (88%)
Frame = +2
Query: 71 MREIVHIQAGQCGNQIGAKFWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 250
MREI+HIQ GQCGNQIG+KFWE+++ EHGI TG Y GDS+LQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 156 bits (379), Expect = 1e-38
Identities = 75/121 (61%), Positives = 84/121 (69%)
Frame = +1
Query: 256 AILXDLEPGTMDSVRSGPFGQIXRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 435
A+L DLEPGTMDS+RSGPFGQI RPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRK
Sbjct: 64 AVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRK 123
Query: 436 EAESCDCLQGFQLTHXXXXXXXXXXXXXXXPKSEKSTLTE**THXQLXHXPKVSGTVVXP 615
EAE+CDCLQGFQ+ H K + + PKVS TVV P
Sbjct: 124 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEP 183
Query: 616 F 618
+
Sbjct: 184 Y 184
Score = 110 bits (264), Expect = 9e-25
Identities = 49/61 (80%), Positives = 54/61 (88%), Gaps = 1/61 (1%)
Frame = +2
Query: 71 MREIVHIQAGQCGNQIGAKFWEIISDEHGIXPTGAYHGD-SDLQLERINVYYNEASGGKY 247
MREI+HIQ GQCGNQIG+KFWE+I DEHGI TG Y GD +DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60
Query: 248 V 250
V
Sbjct: 61 V 61
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 155 bits (376), Expect = 2e-38
Identities = 74/121 (61%), Positives = 84/121 (69%)
Frame = +1
Query: 256 AILXDLEPGTMDSVRSGPFGQIXRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 435
A+L DLEPGTMDS+RSGP+GQI RPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRK
Sbjct: 64 AVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRK 123
Query: 436 EAESCDCLQGFQLTHXXXXXXXXXXXXXXXPKSEKSTLTE**THXQLXHXPKVSGTVVXP 615
EAE+CDCLQGFQ+ H K + + PKVS TVV P
Sbjct: 124 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEP 183
Query: 616 F 618
+
Sbjct: 184 Y 184
Score = 114 bits (275), Expect = 4e-26
Identities = 49/61 (80%), Positives = 56/61 (91%), Gaps = 1/61 (1%)
Frame = +2
Query: 71 MREIVHIQAGQCGNQIGAKFWEIISDEHGIXPTGAYHGDS-DLQLERINVYYNEASGGKY 247
MREI+H+Q GQCGNQIG+KFWE+I DEHG+ PTG Y+GDS DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60
Query: 248 V 250
V
Sbjct: 61 V 61
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 155 bits (375), Expect = 3e-38
Identities = 75/121 (61%), Positives = 84/121 (69%)
Frame = +1
Query: 256 AILXDLEPGTMDSVRSGPFGQIXRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 435
AIL DLEPGTMDSVR+GP+GQI RPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRK
Sbjct: 63 AILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRK 122
Query: 436 EAESCDCLQGFQLTHXXXXXXXXXXXXXXXPKSEKSTLTE**THXQLXHXPKVSGTVVXP 615
EAE+CDCLQGFQ+ H K + + PKVS TVV P
Sbjct: 123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEP 182
Query: 616 F 618
+
Sbjct: 183 Y 183
Score = 111 bits (268), Expect = 3e-25
Identities = 47/60 (78%), Positives = 54/60 (90%)
Frame = +2
Query: 71 MREIVHIQAGQCGNQIGAKFWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 250
MREI+HIQ GQCGNQIG+KFWE++ DEHGI PTG Y G+SDLQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 153 bits (372), Expect = 8e-38
Identities = 74/121 (61%), Positives = 83/121 (68%)
Frame = +1
Query: 256 AILXDLEPGTMDSVRSGPFGQIXRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 435
A+L DLEPGTMDS+RSGP+GQ RPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRK
Sbjct: 63 AVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK 122
Query: 436 EAESCDCLQGFQLTHXXXXXXXXXXXXXXXPKSEKSTLTE**THXQLXHXPKVSGTVVXP 615
EAE+CDCLQGFQ+ H K + + PKVS TVV P
Sbjct: 123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEP 182
Query: 616 F 618
+
Sbjct: 183 Y 183
Score = 111 bits (266), Expect = 5e-25
Identities = 48/60 (80%), Positives = 53/60 (88%)
Frame = +2
Query: 71 MREIVHIQAGQCGNQIGAKFWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 250
MREI+HIQ GQCGNQIGAKFWE++ EHGI PTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 153 bits (372), Expect = 8e-38
Identities = 74/121 (61%), Positives = 83/121 (68%)
Frame = +1
Query: 256 AILXDLEPGTMDSVRSGPFGQIXRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 435
A+L DLEPGTMDS+RSGP+GQ RPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRK
Sbjct: 63 AVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK 122
Query: 436 EAESCDCLQGFQLTHXXXXXXXXXXXXXXXPKSEKSTLTE**THXQLXHXPKVSGTVVXP 615
EAE+CDCLQGFQ+ H K + + PKVS TVV P
Sbjct: 123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEP 182
Query: 616 F 618
+
Sbjct: 183 Y 183
Score = 111 bits (266), Expect = 5e-25
Identities = 48/60 (80%), Positives = 53/60 (88%)
Frame = +2
Query: 71 MREIVHIQAGQCGNQIGAKFWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 250
MREI+HIQ GQCGNQIGAKFWE++ EHGI PTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 153 bits (370), Expect = 1e-37
Identities = 75/121 (61%), Positives = 83/121 (68%)
Frame = +1
Query: 256 AILXDLEPGTMDSVRSGPFGQIXRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 435
A+L DLEPGTMDS+RSGPFGQI RPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRK
Sbjct: 63 AVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK 122
Query: 436 EAESCDCLQGFQLTHXXXXXXXXXXXXXXXPKSEKSTLTE**THXQLXHXPKVSGTVVXP 615
EAE+ DCLQGFQ+ H K + + PKVS TVV P
Sbjct: 123 EAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEP 182
Query: 616 F 618
+
Sbjct: 183 Y 183
Score = 110 bits (265), Expect = 7e-25
Identities = 49/60 (81%), Positives = 53/60 (88%)
Frame = +2
Query: 71 MREIVHIQAGQCGNQIGAKFWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 250
MREI+HIQ GQCGNQIGAKFWE+I DEHGI TG Y GDS LQLERI+VY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 79.8 bits (188), Expect = 1e-15
Identities = 35/71 (49%), Positives = 48/71 (67%)
Frame = +1
Query: 256 AILXDLEPGTMDSVRSGPFGQIXRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 435
A+ DLEP +D VR+G + Q+ P+ + G+ A NN+A+GHYT G E+VD LD VRK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRK 124
Query: 436 EAESCDCLQGF 468
A++C LQGF
Sbjct: 125 LADNCTGLQGF 135
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +2
Query: 71 MREIVHIQAGQCGNQIGAKFWEIISDEHGIXPTGAYHGDSDLQL--ERINVYYNEASGGK 244
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 245 YV 250
+V
Sbjct: 61 HV 62
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 79.8 bits (188), Expect = 1e-15
Identities = 35/71 (49%), Positives = 48/71 (67%)
Frame = +1
Query: 256 AILXDLEPGTMDSVRSGPFGQIXRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 435
A+ DLEP +D VR+G + Q+ P+ + G+ A NN+A+GHYT G E+VD LD VRK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRK 124
Query: 436 EAESCDCLQGF 468
A++C LQGF
Sbjct: 125 LADNCTGLQGF 135
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +2
Query: 71 MREIVHIQAGQCGNQIGAKFWEIISDEHGIXPTGAYHGDSDLQL--ERINVYYNEASGGK 244
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 245 YV 250
+V
Sbjct: 61 HV 62
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/71 (47%), Positives = 48/71 (67%)
Frame = +1
Query: 256 AILXDLEPGTMDSVRSGPFGQIXRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 435
A+ DLEP +D VR+G + Q+ P+ + G+ A NN+A+GHYT G E+VD LD +RK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRK 124
Query: 436 EAESCDCLQGF 468
A++C LQGF
Sbjct: 125 LADNCTGLQGF 135
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +2
Query: 71 MREIVHIQAGQCGNQIGAKFWEIISDEHGIXPTGAYHGDSDL--QLERINVYYNEASGGK 244
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 245 YV 250
+V
Sbjct: 61 HV 62
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/71 (47%), Positives = 48/71 (67%)
Frame = +1
Query: 256 AILXDLEPGTMDSVRSGPFGQIXRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 435
A+ DLEP +D VR+G + Q+ P+ + G+ A NN+A+GHYT G E+VD LD +RK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRK 124
Query: 436 EAESCDCLQGF 468
A++C LQGF
Sbjct: 125 LADNCTGLQGF 135
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +2
Query: 71 MREIVHIQAGQCGNQIGAKFWEIISDEHGIXPTGAYHGDSDL--QLERINVYYNEASGGK 244
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 245 YV 250
+V
Sbjct: 61 HV 62
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/71 (47%), Positives = 48/71 (67%)
Frame = +1
Query: 256 AILXDLEPGTMDSVRSGPFGQIXRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 435
A+ DLEP +D VR+G + Q+ P+ + G+ A NN+A+GHYT G E+VD LD +RK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRK 124
Query: 436 EAESCDCLQGF 468
A++C LQGF
Sbjct: 125 LADNCTGLQGF 135
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 71 MREIVHIQAGQCGNQIGAKFWEIISDEHGIXPTGAYHGDSDL--QLERINVYYNEASGGK 244
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 245 YV 250
+V
Sbjct: 61 HV 62
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/71 (47%), Positives = 48/71 (67%)
Frame = +1
Query: 256 AILXDLEPGTMDSVRSGPFGQIXRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 435
A+ DLEP +D VR+G + Q+ P+ + G+ A NN+A+GHYT G E+VD LD +RK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRK 124
Query: 436 EAESCDCLQGF 468
A++C LQGF
Sbjct: 125 LADNCTGLQGF 135
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 71 MREIVHIQAGQCGNQIGAKFWEIISDEHGIXPTGAYHGDSDL--QLERINVYYNEASGGK 244
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 245 YV 250
+V
Sbjct: 61 HV 62
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 78.2 bits (184), Expect = 5e-15
Identities = 33/71 (46%), Positives = 49/71 (69%)
Frame = +1
Query: 256 AILXDLEPGTMDSVRSGPFGQIXRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 435
A+ DLEP +D VR+G + Q+ P+ + G+ A NN+A+GHYT G E+VD+ L+ +RK
Sbjct: 65 AVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLERLRK 124
Query: 436 EAESCDCLQGF 468
A++C LQGF
Sbjct: 125 LADNCTGLQGF 135
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +2
Query: 71 MREIVHIQAGQCGNQIGAKFWEIISDEHGIXPTGAYHGDSDLQL--ERINVYYNEASGGK 244
MREI+ I GQ G Q+G WE+ EHGI P G DS + + N +++E S G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 245 YV 250
+V
Sbjct: 61 HV 62
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 60.9 bits (141), Expect = 7e-10
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Frame = +1
Query: 256 AILXDLEPGTMDSVRSGPFGQIXRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVV 429
A+L DLEP ++ +++G + + +N GAGNNWA G Y +G + + ++D++
Sbjct: 64 ALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDMI 122
Query: 430 RKEAESCDCLQGFQLTH 480
+EA+ D L+GF L H
Sbjct: 123 DREADGSDSLEGFVLCH 139
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/59 (38%), Positives = 35/59 (59%)
Frame = +2
Query: 74 REIVHIQAGQCGNQIGAKFWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 250
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYI 61
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Frame = +1
Query: 256 AILXDLEPGTMDSVRSGPFGQIXRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVV 429
A+L DLEP ++ +++G + + +N GAGNNWA G Y +G + + ++D++
Sbjct: 64 ALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDMI 122
Query: 430 RKEAESCDCLQGFQLTH 480
+EA+ D L+GF L H
Sbjct: 123 DREADGSDSLEGFVLCH 139
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/59 (38%), Positives = 35/59 (59%)
Frame = +2
Query: 74 REIVHIQAGQCGNQIGAKFWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 250
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYI 61
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 30.7 bits (66), Expect = 0.90
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 71 MREIVHIQAGQCGNQIGAKFWEIISDEHGI 160
MREIV IQ G+ N +G+ FW + G+
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGL 30
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 30.7 bits (66), Expect = 0.90
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +1
Query: 403 LVDSVLDVVRKEAESCDCLQGF 468
+++SV VVRKEAE+C+CLQ F
Sbjct: 1 MINSV-GVVRKEAENCNCLQVF 21
>At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 304
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 478 VSVGIPGGNHTIPLPFERRLKLNRRAQHPPCSVPWPSC 365
VS G+PG HT P ++ ++ +++ P S PW SC
Sbjct: 136 VSSGLPGKQHTSSSPPSFVVEPSKNSKYIPSSSPW-SC 172
>At1g21850.1 68414.m02735 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 551
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -2
Query: 241 AAGGFIVVYIDALQLQVRVPMVSTGGVDAVLVGDDLPELSSDLVAALTSLDMYDFPHFVL 62
AAGGF + I + + ++ VP + G VL+GD DL A L + FP +L
Sbjct: 136 AAGGFGAIRISS-RPRIPVPFPAPAGDYTVLIGDWYKTNHKDLRAQLDNGGKLPFPDGIL 194
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 77 EIVHIQAGQCGNQIGAKFWEIISD 148
+I++ A + G+ GA FWE+IS+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVISE 369
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,916,576
Number of Sequences: 28952
Number of extensions: 216728
Number of successful extensions: 600
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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