Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060173.seq
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   3.3  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   4.4  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   7.6  

>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 283 PVLFKFFAPFANFLTCLILIVLVKFVVSKKDIL 381
           P  F F+     F+T + +I L+ FV S  ++L
Sbjct: 522 PTNFSFYRDSFRFITAMFIIALIGFVFSSINLL 554


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = +3

Query: 348 CEVCGIKERHLTEKRFFARFPLDVNRCKQWVKMVGKEDLAYLQVH-MLHDLKHVWKHISQ 524
           C    +K+R L+    F +FPL VN      K     DL  L ++  + ++ ++  H + 
Sbjct: 640 CRDNKVKDRDLSFSPVFQKFPLKVNTSATLSK-----DLMSLPINEWVKNVMYIVTHETD 694

Query: 525 DETLQNQRSA*KNELSQTELDTATIE 602
            + +Q       N+L  T++ T T+E
Sbjct: 695 WKVVQYILINFTNQLRNTKMFTKTVE 720


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 359 TNFTSTMSIRHVKKFAK 309
           TNF S  S+RH K F+K
Sbjct: 617 TNFGSNNSLRHAKSFSK 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,722
Number of Sequences: 5004
Number of extensions: 51716
Number of successful extensions: 157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)