Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060173.seq
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426...    29   3.4  
02_03_0296 + 17393706-17394052,17394278-17394388,17395507-17395687     28   7.9  

>03_04_0161 +
           17838466-17838551,17842379-17842445,17842537-17842662,
           17842756-17842886,17843121-17843220,17843334-17843466,
           17843500-17843544,17843545-17843608,17843692-17844469,
           17844897-17845229,17845427-17845634,17845733-17845809,
           17846168-17846240,17846343-17846413,17846597-17846716,
           17846815-17846879,17846974-17847124
          Length = 875

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +3

Query: 219 YSSCLVLFLFVNVSY--CC*ETDSCVV--*IFCAFCKLFNMPDTHRTCEVC 359
           +S+CL  FLF  VS      E   C +   ++C  CK  ++ D HR+C+ C
Sbjct: 219 FSNCLFTFLFAGVSMDEVKLEQADCDMDERVYCDRCKT-SIVDFHRSCKAC 268


>02_03_0296 + 17393706-17394052,17394278-17394388,17395507-17395687
          Length = 212

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 666 WPCGVTSGLRVEL--QKLKKNFISQWWQCQVQFGTARFFKRFFDFVKSRLE 520
           W  GV SGLRVE+  Q+ +K  +    +  +   + R  +RF    + RL+
Sbjct: 117 WSIGVRSGLRVEVEPQRWRKPRVEPLLEAVLDVSSTRRLQRFNAHARRRLK 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,108,450
Number of Sequences: 37544
Number of extensions: 273425
Number of successful extensions: 676
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)