Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060173.seq
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical ...    28   7.0  
AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical ...    28   7.0  
AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical ...    28   7.0  
Z46812-5|CAA86847.2|  775|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z37093-7|CAA85468.2|  775|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1c protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 318 LFNMPDTHRTCEVCGIKERH 377
           LFNMP+TH  C++    ++H
Sbjct: 147 LFNMPETHLICQLIDFFDKH 166


>AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1a protein.
          Length = 556

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 318 LFNMPDTHRTCEVCGIKERH 377
           LFNMP+TH  C++    ++H
Sbjct: 133 LFNMPETHLICQLIDFFDKH 152


>AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1b protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 318 LFNMPDTHRTCEVCGIKERH 377
           LFNMP+TH  C++    ++H
Sbjct: 136 LFNMPETHLICQLIDFFDKH 155


>Z46812-5|CAA86847.2|  775|Caenorhabditis elegans Hypothetical
           protein ZK669.1a protein.
          Length = 775

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = -1

Query: 449 NHLYPLFTSIDIQRKPCEKPFFSKMSFFDTTNFTSTMSIRHVKKFAKGAKN 297
           +H   + T +D  R+   KPF      F+ +  T    + H K+  +  K+
Sbjct: 44  DHARKVHTLVDTSRRDINKPFMPLREIFENSFDTEVEMVTHTKETTEHLKD 94


>Z37093-7|CAA85468.2|  775|Caenorhabditis elegans Hypothetical
           protein ZK669.1a protein.
          Length = 775

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = -1

Query: 449 NHLYPLFTSIDIQRKPCEKPFFSKMSFFDTTNFTSTMSIRHVKKFAKGAKN 297
           +H   + T +D  R+   KPF      F+ +  T    + H K+  +  K+
Sbjct: 44  DHARKVHTLVDTSRRDINKPFMPLREIFENSFDTEVEMVTHTKETTEHLKD 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,251,265
Number of Sequences: 27780
Number of extensions: 290337
Number of successful extensions: 782
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)