Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060173.seq
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   2.7  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   2.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.2  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 546 FDFVKSRLEKCASKHVLNHVAYVLEDKPDLLCQPSLPIVYIY 421
           FD V     +C S+H          DK +L+ +PS+   Y+Y
Sbjct: 35  FDLVAEDKARCMSEHGTTQAQIDDVDKGNLVNEPSI-TCYMY 75


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 546 FDFVKSRLEKCASKHVLNHVAYVLEDKPDLLCQPSLPIVYIY 421
           FD V     +C S+H          DK +L+ +PS+   Y+Y
Sbjct: 35  FDLVAEDKARCMSEHGTTQAQIDDVDKGNLVNEPSI-TCYMY 75


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 412 WMSIDVNNG*RWLAKKIWLIFKYICYMI 495
           W++I+      WL +  W +FK + +M+
Sbjct: 311 WVAINELQDSFWLEQYSWALFKAMSHML 338


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 412 WMSIDVNNG*RWLAKKIWLIFKYICYMI 495
           W++I+      WL +  W +FK + +M+
Sbjct: 279 WVAINELQDSFWLEQYSWALFKAMSHML 306


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 86  MAF*FFNIAYKFTLIFFEK 142
           + F FFN+AY  T +F E+
Sbjct: 425 IVFAFFNLAYWSTYLFREE 443


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 86  MAF*FFNIAYKFTLIFFEK 142
           + F FFN+AY  T +F E+
Sbjct: 425 IVFAFFNLAYWSTYLFREE 443


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 80  FLNNSMCYSS 51
           FLNNSMC S+
Sbjct: 628 FLNNSMCTST 637


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,542
Number of Sequences: 438
Number of extensions: 3191
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)