Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060173.seq
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17150.1 68414.m02091 glycoside hydrolase family 28 protein /...    31   0.93 
At5g24480.1 68418.m02885 hypothetical protein similar to unknown...    29   2.1  
At4g00910.1 68417.m00124 expressed protein contains Pfam profile...    28   6.5  

>At1g17150.1 68414.m02091 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Salix gilgiana] GI:6714524; contains
           Pfam profile PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 402

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
 Frame = +1

Query: 448 LAKKIWLIFKYICYMI*NMFGSTFLK---TRLYKIKEALKKTSCPKL--NLTLPPLRDEI 612
           + K+IW+ F+YI Y+   +FG   L     + + + +  K  +CPKL  N+    +++  
Sbjct: 107 IKKEIWINFRYINYL--TVFGDGTLDGQGKKSWSLIDCQKDNNCPKLAINMGFDFVKNSS 164

Query: 613 LLQFLQLDSQAG 648
           +     L+S+AG
Sbjct: 165 MNGITSLNSKAG 176


>At5g24480.1 68418.m02885 hypothetical protein similar to unknown
           protein (gb|AAD32930.1)
          Length = 350

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 455 FANHLYPLFTSIDIQRKPCEKPFFSKMS 372
           F+NH YPL  +++ Q KP EK F S  S
Sbjct: 238 FSNHFYPLILNLEPQTKP-EKTFTSHES 264


>At4g00910.1 68417.m00124 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 497

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 433 CLHLLTSRGNLAKNRFSVRCLSLIPQTSQV-R*VSGMLKSLQKAQKI 296
           C++  T   +  KN F   C+ L   +S++ R ++ M+K+ +K+ K+
Sbjct: 345 CINYETEAPDQVKNHFGEACMKLSSASSKILRELADMMKNTRKSSKM 391


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,074,837
Number of Sequences: 28952
Number of extensions: 252640
Number of successful extensions: 655
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)