Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060172.seq
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces...    26   4.4  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   5.8  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   7.7  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   7.7  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    25   7.7  

>SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 196

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 220 FGRIRKQFGLDDRNVVTFFGKGFNIHFVDYMVAVSW 113
           +G++    G   +N    +GKG  +H   YM++ +W
Sbjct: 89  YGQLYANDGRSSKNPTQNYGKGGLLHEHRYMISCTW 124


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 352 YLGLIEMFKDQFDNINVRNLIANNQTF 432
           YL + E+ K + +++ +RN +A  QTF
Sbjct: 70  YLYISEILKSKAESLRIRNSLATLQTF 96


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 150 LKPLPKNVTTLRSSSP 197
           + P+P NV TLRSS P
Sbjct: 383 IPPIPSNVETLRSSLP 398


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 10  VIRVEAKNDYSLLACTAV-YAYCCKCGQYIGRVSYASLQP 126
           VI +E K +        V + +CC+C  YIG    +S +P
Sbjct: 50  VIEMEPKTEQMSTGRFIVRHIHCCRCHTYIGWKYVSSYEP 89


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = -1

Query: 525 VARRDLITGARIVQVAKHQRIIGKRFHDN*IKRLVVGNEIAHVD 394
           +AR   +     V ++ ++R+  + ++ + I++LV+ NEI  V+
Sbjct: 339 IARIPSLVKLNDVNISPNERLDAELYYTSCIRKLVIDNEIKDVE 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,326
Number of Sequences: 5004
Number of extensions: 59750
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)