Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060172.seq
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601...    32   0.49 
01_01_1124 + 8916863-8917090,8917745-8917936,8918115-8918280,891...    30   2.0  
06_01_0889 - 6807449-6809257                                           29   4.5  
07_01_0516 - 3850252-3852870                                           28   6.0  
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421...    28   6.0  
08_01_0269 - 2172363-2172538,2172632-2172697,2172790-2172887,217...    28   7.9  
01_06_1635 - 38794215-38794325,38794434-38794579,38796845-387968...    28   7.9  

>11_01_0727 -
           6010537-6010548,6011029-6011606,6011709-6011774,
           6011867-6011964,6013238-6013608
          Length = 374

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 104 FPTPAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCG 232
           FP P  +   + + Y++ LA+   +    K +++A+ST TY G
Sbjct: 100 FPDPKPTREEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYVG 142


>01_01_1124 +
           8916863-8917090,8917745-8917936,8918115-8918280,
           8918373-8918794
          Length = 335

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 405 AHVDIVKLVFEHFNQAQVVGGGYRVCIGHHSALSKHCR 292
           A+ D V L F+HF Q+ V  G      G    + K+CR
Sbjct: 291 AYADDVNLFFKHFAQSMVNMGNISPLTGSQGEIRKNCR 328


>06_01_0889 - 6807449-6809257
          Length = 602

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 316 VVSDTDTVTAANYLGLIEMFKDQFDNINVRNLIA-NNQTFDLVVVEAFADYALVFGHL 486
           VVS T  V     LGL++  ++ FD +  RNL++ N+     V  + F D   VF  +
Sbjct: 164 VVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEM 221


>07_01_0516 - 3850252-3852870
          Length = 872

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 310 RGVVSDTDTVTAANYLGLIEMFKDQFDNINVRNLIANN 423
           + V+S T  +      GL++M  D FD + VRN +  N
Sbjct: 317 KDVISWTGLLNGYMEFGLVDMAMDVFDRMPVRNFVTYN 354


>06_01_0587 -
           4211917-4212021,4212250-4212478,4213426-4213759,
           4215116-4215186,4215374-4215493,4216353-4216771,
           4216885-4217336,4217434-4217812
          Length = 702

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 683 NMLAQNFKFFIQTHFRHQV-RPSCRRKXXRPNVRMVNGVPAPRR 555
           +M+A+NFKF  +TH  +Q+ RP    K       +   VP+PRR
Sbjct: 475 DMVAENFKFGPETHLTNQILRPRSPYKFSGSRSLL---VPSPRR 515


>08_01_0269 -
           2172363-2172538,2172632-2172697,2172790-2172887,
           2173442-2173791
          Length = 229

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 92  ILAVFPT-PAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCG 232
           I+  FP  PA +   +   Y+  LA    ++   K  ++A+ST TY G
Sbjct: 88  IVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTG 135


>01_06_1635 -
           38794215-38794325,38794434-38794579,38796845-38796898,
           38796999-38797167
          Length = 159

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
 Frame = -3

Query: 343 RLPCLYRTPL-RAF*TLPNSLLVSCIA*PTCGINFRNITAISFGRIRKQFGLDDR----N 179
           R P L R  L   F  L   LL++ +A PT   +   +T ++  + +    LD      +
Sbjct: 8   RSPVLPRRRLAEPFLLLLLLLLLAAVARPTAAADVVELTLLAGAQEKGAVCLDGSPPGYH 67

Query: 178 VVTFFGKGFNIHFVDYMVAVSWRRKHGQYIDRIYS 74
           +   FG GF   FVD +  V  ++  G +ID  ++
Sbjct: 68  LQRGFGSGFRNKFVDDVEIVKDKKDWGLFIDSCFT 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,401,337
Number of Sequences: 37544
Number of extensions: 423806
Number of successful extensions: 1045
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)