Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060172.seq
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2) 31 1.1
SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07) 29 2.7
SB_10016| Best HMM Match : FliG_C (HMM E-Value=0.6) 29 2.7
SB_15366| Best HMM Match : rve (HMM E-Value=0.00011) 29 3.5
SB_59352| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24) 24 4.3
SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_45181| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_43726| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-31) 28 8.1
>SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 10 VIRVEAKNDYSLLACTAVYAYCCKCGQYIGRVSYASLQPPYSLQSVY 150
V+R E KN+ + + Y CG Y GRV +L PP+ V+
Sbjct: 20 VLRKEKKNNSHWVFGNVFFKYRKSCGAYEGRVCKPNLTPPFGRVKVH 66
>SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)
Length = 1056
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Frame = +3
Query: 141 KCILKPLPKNVTTLRSSSPNCLRIRPKLIAVILRKLIPHVGQAIQETSNEFGNV*KARSG 320
K +L P+ + TL + N + L + RKL PH Q + +F + + R
Sbjct: 875 KLVLHATPEQINTLSELALNVVNQNIPLSRGMYRKLYPHRNQLHTLATRKFASRRRRRKV 934
Query: 321 VRYRHGN----------RRQLPGLD*NVQRPV 386
++ R GN +R LP L NV P+
Sbjct: 935 LQQRGGNALATLLPAVDKRYLPALAKNVALPI 966
>SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)
Length = 505
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 379 DQFDNINVRNLIANNQTFDLVVVEAFADYALVFGHLYDPGARNQIA 516
DQ+ I+ NL++ + F +AF D +LVF + Y PGA ++
Sbjct: 162 DQWKKISHSNLVSLREVF---TSKAFGDNSLVFVYDYHPGAETLLS 204
>SB_10016| Best HMM Match : FliG_C (HMM E-Value=0.6)
Length = 198
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +1
Query: 280 LVTNSAMFRKRGVVSDTDTVTAANYLGLIEMFKDQFDNINVRNLIANNQT 429
L T + R++ +V DT+ + NY G++++F + N+ +R+ + T
Sbjct: 86 LATKQSKVRRQKLVFKHDTLLSVNYFGVLKIFSGE-RNLQLRSSLVEGTT 134
>SB_15366| Best HMM Match : rve (HMM E-Value=0.00011)
Length = 1178
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 50 LALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYIEALAEKCHNV 181
LA AV A+ + +FP AY+H YK+ + L H +
Sbjct: 990 LAACCDAAAVQALRLGGLFPYCAYTHAYTYKMIADQLWSAMHEI 1033
>SB_59352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Frame = +1
Query: 178 RYGRQAQTVCVFDQNLLR*YYGS*FRMSVKQYKKL------VTNSAMFRKRGVVSDTDTV 339
R Q T+ V + +L+ Y S ++V+QYK L +T+S+++R G+V + D +
Sbjct: 156 RLQNQTATIKVNLKRMLK-YKSSALSLNVRQYKVLQAANWLITHSSLYRDEGIVLNNDWI 214
Query: 340 TAAN 351
N
Sbjct: 215 NQYN 218
>SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)
Length = 333
Score = 24.2 bits (50), Expect(2) = 4.3
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +1
Query: 52 CTAVYAYCCKC 84
CT +YAY C C
Sbjct: 255 CTRIYAYVCAC 265
Score = 23.0 bits (47), Expect(2) = 4.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 49 ACTAVYAYCC 78
ACT +YAY C
Sbjct: 246 ACTCIYAYLC 255
>SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 50 LALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPKL 202
LA AV A+++ +FP AY++ YK+ + L H+V ++
Sbjct: 387 LAACCDAAAVPALHLGGLFPYCAYTYTYTYKIIADQLWSAMHDVAAAAKRV 437
>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2973
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 50 LALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPKL 202
LA AV A+++ +FP AYS+ YK+ + L H V ++
Sbjct: 1227 LAACCDAAAVPALHLGGLFPYCAYSYTYTYKMIADQLWSAMHEVAAAAKRV 1277
>SB_45181| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 747
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 139 VDYMVAVSWRRKHGQYIDRIYSSKRRQQCKPAK 41
V YM A SW +H Q I + K+ Q KP K
Sbjct: 361 VRYMTA-SWTTRHSQSISKSNMDKQAQSIKPKK 392
>SB_43726| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-31)
Length = 516
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 136 DYMVAVSWRRKHGQYIDRIYSSKRRQQCKPAKNSHFLLQPE 14
DY+ + S H Y D + SS R QC P N L QP+
Sbjct: 188 DYLGSSSLAHGHAMY-DSLGSSSRYPQCPPGFNPLALHQPK 227
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,237,409
Number of Sequences: 59808
Number of extensions: 477204
Number of successful extensions: 1279
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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