Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060171.seq
         (724 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    27   0.20 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    25   0.62 
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    25   0.82 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   1.4  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 126  ENKGKWYGSIQDNLVPNSCSPGDPLVLERPPPRWSYRV 13
            E+   +Y  +  +LVP +C+PG     E     W Y+V
Sbjct: 1216 ESCSSFYVCVNGHLVPQNCAPGLHYNPEEHMCDWKYKV 1253


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 165 IYTLWRELWKKDQENKGKWYGSIQDNLVPNSCSPGDPLVLERP 37
           IY    +L+   ++N+ +W  SI+ +L  N C    P   ++P
Sbjct: 166 IYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKP 208


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 129 QENKGKWYGSIQDNLVPNSC 70
           +ENK  W  SI+ NL  N C
Sbjct: 121 RENKQGWQNSIRHNLSLNKC 140


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 114 KWYGSIQDNLVPNSCSPGDPLVLERP 37
           +W  S Q   VPN  +P     ++RP
Sbjct: 23  RWLNSQQPRNVPNFAAPSTSTAVQRP 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,176
Number of Sequences: 336
Number of extensions: 3932
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)