Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060171.seq
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    30   0.29 
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   2.1  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.7  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   3.6  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   4.7  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   6.3  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = -1

Query: 436 RPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRSCADSFISLISD 275
           RP+++ S   K+ + +L++ L+   E   +     +GFR GRSC  +  S+ ++
Sbjct: 308 RPLTIGSPRDKLVQEILRIVLEAIYEP--LFNTASHGFRPGRSCHSALRSIFTN 359


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 320 PKAILDIRNDVISFNIPVKTDF*HCFKNFA 409
           PKA+     DV + N P+++ F  CFKN +
Sbjct: 198 PKALCKELTDVRTLNHPLRSIFTFCFKNIS 227


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 79  RHEVILDTSIPLSLVFLIFLPQFPPQSVN 165
           RH + L     L++  L+  PQFPPQ++N
Sbjct: 331 RHLLKLWGDYDLAMTKLLASPQFPPQNIN 359


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 18  CSSTAVAAALELVDPPGCRNSARGYLGYFHTTFPCFPDLSSTIPST 155
           CS + V++ ++L   PG     R  +  +      FPDLSS I ST
Sbjct: 16  CSFSYVSS-IKLCGIPGAPACKRREISLYKRATDTFPDLSSAIAST 60


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 428 NWSI*ASKFWCLVWFEYRNNTLC 496
           +W++  +K  CL  + Y NN LC
Sbjct: 26  SWNVIVAKVNCLEVYSYENNRLC 48


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 481 PILKPDKAPELASSYRPISLSS 416
           P+L+P   P++ S + P+SL S
Sbjct: 151 PVLRPPPVPQVPSHWYPVSLPS 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,355
Number of Sequences: 5004
Number of extensions: 64972
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)