Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060171.seq
(724 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 52 4e-07
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 32 0.48
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 32 0.48
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 32 0.48
U41036-9|ABA61867.1| 245|Caenorhabditis elegans Dopamine recept... 28 7.8
U41036-8|ABA61866.1| 590|Caenorhabditis elegans Dopamine recept... 28 7.8
U41036-7|ABA61865.1| 607|Caenorhabditis elegans Dopamine recept... 28 7.8
U41036-6|ABA61864.1| 605|Caenorhabditis elegans Dopamine recept... 28 7.8
AY485309-1|AAR37416.1| 607|Caenorhabditis elegans DOP-3 protein. 28 7.8
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 52.0 bits (119), Expect = 4e-07
Identities = 31/87 (35%), Positives = 47/87 (54%)
Frame = -1
Query: 532 TLA*QLYSQAWKTQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEAN 353
+L+ + WK VI I KP K P +ASSYRPISL S + K+ E + R+ +E+
Sbjct: 374 SLSTNIIPDKWKKANVIMIPKPKKDPAIASSYRPISLLSPIAKLLEKAILKRIKNSIES- 432
Query: 352 HIIPDVQYGFRRGRSCADSFISLISDL 272
P Q+GF+ S + I + +D+
Sbjct: 433 ---PAHQHGFKPEHSTTTAVIQVTNDI 456
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 31.9 bits (69), Expect = 0.48
Identities = 27/79 (34%), Positives = 34/79 (43%)
Frame = -1
Query: 502 WKTQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGF 323
WKT I K L +YRPI L L K+F L R+ ++ P Q GF
Sbjct: 432 WKTSKTTLIFKKGDRENL-ENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQ--PVEQAGF 488
Query: 322 RRGRSCADSFISLISDLDI 266
RR S D SL L++
Sbjct: 489 RRSFSTIDHIHSLQRLLEV 507
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 31.9 bits (69), Expect = 0.48
Identities = 27/79 (34%), Positives = 34/79 (43%)
Frame = -1
Query: 502 WKTQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGF 323
WKT I K L +YRPI L L K+F L R+ ++ P Q GF
Sbjct: 603 WKTSKTTLIFKKGDRENL-ENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQ--PVEQAGF 659
Query: 322 RRGRSCADSFISLISDLDI 266
RR S D SL L++
Sbjct: 660 RRSFSTIDHIHSLQRLLEV 678
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 31.9 bits (69), Expect = 0.48
Identities = 27/79 (34%), Positives = 34/79 (43%)
Frame = -1
Query: 502 WKTQCVIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGF 323
WKT I K L +YRPI L L K+F L R+ ++ P Q GF
Sbjct: 342 WKTSKTTLIFKKGDRENL-ENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQ--PVEQAGF 398
Query: 322 RRGRSCADSFISLISDLDI 266
RR S D SL L++
Sbjct: 399 RRSFSTIDHIHSLQRLLEV 417
>U41036-9|ABA61867.1| 245|Caenorhabditis elegans Dopamine receptor
protein 3, isoformd protein.
Length = 245
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 439 YRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRS 308
Y+ + ++ I +L + LD Y+ H I QYG R GR+
Sbjct: 83 YQALDVACSTASILN-LLAISLDRYIAIGHPISYAQYGARGGRA 125
>U41036-8|ABA61866.1| 590|Caenorhabditis elegans Dopamine receptor
protein 3, isoformc protein.
Length = 590
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 439 YRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRS 308
Y+ + ++ I +L + LD Y+ H I QYG R GR+
Sbjct: 83 YQALDVACSTASILN-LLAISLDRYIAIGHPISYAQYGARGGRA 125
>U41036-7|ABA61865.1| 607|Caenorhabditis elegans Dopamine receptor
protein 3, isoformb protein.
Length = 607
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 439 YRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRS 308
Y+ + ++ I +L + LD Y+ H I QYG R GR+
Sbjct: 98 YQALDVACSTASILN-LLAISLDRYIAIGHPISYAQYGARGGRA 140
>U41036-6|ABA61864.1| 605|Caenorhabditis elegans Dopamine receptor
protein 3, isoforma protein.
Length = 605
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 439 YRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRS 308
Y+ + ++ I +L + LD Y+ H I QYG R GR+
Sbjct: 98 YQALDVACSTASILN-LLAISLDRYIAIGHPISYAQYGARGGRA 140
>AY485309-1|AAR37416.1| 607|Caenorhabditis elegans DOP-3 protein.
Length = 607
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 439 YRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRS 308
Y+ + ++ I +L + LD Y+ H I QYG R GR+
Sbjct: 98 YQALDVACSTASILN-LLAISLDRYIAIGHPISYAQYGARGGRA 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,716,232
Number of Sequences: 27780
Number of extensions: 351467
Number of successful extensions: 764
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -