Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060170.seq
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   3.1  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   3.1  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   3.1  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   3.1  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   3.1  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   3.1  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   3.1  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   3.1  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   3.1  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   9.5  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   9.5  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 483 LSTQRPRPRCVTMVTASSNFRGKKTSLSIQPVSADSCP 596
           LST    PR    ++  SN    K+S    P+S  + P
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSP 153


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 483 LSTQRPRPRCVTMVTASSNFRGKKTSLSIQPVSADSCP 596
           LST    PR    ++  SN    K+S    P+S  + P
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSP 153


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 483 LSTQRPRPRCVTMVTASSNFRGKKTSLSIQPVSADSCP 596
           LST    PR    ++  SN    K+S    P+S  + P
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSP 153


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 483 LSTQRPRPRCVTMVTASSNFRGKKTSLSIQPVSADSCP 596
           LST    PR    ++  SN    K+S    P+S  + P
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSP 153


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 483 LSTQRPRPRCVTMVTASSNFRGKKTSLSIQPVSADSCP 596
           LST    PR    ++  SN    K+S    P+S  + P
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSP 153


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 483 LSTQRPRPRCVTMVTASSNFRGKKTSLSIQPVSADSCP 596
           LST    PR    ++  SN    K+S    P+S  + P
Sbjct: 72  LSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSP 109


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 483 LSTQRPRPRCVTMVTASSNFRGKKTSLSIQPVSADSCP 596
           LST    PR    ++  SN    K+S    P+S  + P
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSP 153


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 483 LSTQRPRPRCVTMVTASSNFRGKKTSLSIQPVSADSCP 596
           LST    PR    ++  SN    K+S    P+S  + P
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSP 153


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 483 LSTQRPRPRCVTMVTASSNFRGKKTSLSIQPVSADSCP 596
           LST    PR    ++  SN    K+S    P+S  + P
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSP 153


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 247 DKVTCFITACSGREKEDGS 191
           DK+ CF  + +G    +GS
Sbjct: 24  DKILCFFASWAGYRNGEGS 42


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 598 SILXCQDTPFVKFTYDAEVTG 660
           + L CQD  F  F Y   + G
Sbjct: 341 NFLQCQDEKFESFVYYHRILG 361


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,329
Number of Sequences: 336
Number of extensions: 2940
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)