Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060170.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    62   6e-11
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    28   1.1  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    27   1.9  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    27   3.4  
SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...    25   7.8  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   7.8  
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...    25   7.8  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   7.8  

>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 62.5 bits (145), Expect = 6e-11
 Identities = 28/41 (68%), Positives = 33/41 (80%)
 Frame = +1

Query: 511 ALQWLQPAQTFGGRKHPYLFSQCQPIHARSILXCQDTPFVK 633
           ALQ+L+P QT GG K PY+FS+CQ IHARS + CQDTP VK
Sbjct: 116 ALQFLKPEQTIGG-KFPYVFSECQAIHARSFIPCQDTPSVK 155


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +2

Query: 476 IKIKYTTSPSALRYNGYSQLKLSGEENILIYSASVSRFMPVRF 604
           I +K     S L Y G   L  S E N + YS S+S F P  F
Sbjct: 184 ITLKEYVPSSMLPYKGVLGLAASTEINSIDYSDSISSFSPPTF 226


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 355 YCQFTRIKDHISDILEHVNVESGGSV*DFVF-KIQFNDKVTCFITA 221
           Y  F + K H   +L++VN   GG + D++  + +  D V C + A
Sbjct: 563 YLDFVKTKHHFGIVLDYVN---GGELFDYILARRRLEDSVACRLFA 605


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 453 PQVAIS*KLKLSTQRPRPRCVTM-VTASSNFRGKKTSLSIQPVSAD-SCPFDS 605
           P  A+S     S+ RP P    + VT   + +GKK S+ +QP   +   PF S
Sbjct: 624 PLTAVSSNSGQSSGRPGPLSPNLNVTTRIDIKGKKGSMHLQPRDVNRKVPFKS 676


>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 265 FKIQFNDKVTCFITACSGREKEDGSRGLK 179
           F I+ N+K+ C +T    + +E   RGLK
Sbjct: 57  FGIRRNEKIACHVTVRGPKAEEILERGLK 85


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +2

Query: 263 ENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYKLDDPVPNYGS 424
           ++ V NG     +D  +D  + ++ S E +   I LD +    ++  P P YG+
Sbjct: 40  QSSVSNGHGLYSLD--RDETESLMSSHEASNAGISLDSSFRVIQVGQPEPQYGN 91


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 265 FKIQFNDKVTCFITACSGREKEDGSRGLK 179
           F I+ N+K+ C +T    + +E   RGLK
Sbjct: 57  FGIRRNEKIACHVTVRGPKAEEILERGLK 85


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 538 TFGGRKHPYLFSQCQPIHARSILXCQDTPFVKFTYD 645
           +F G K+P + S C  + +RS       P  KFT D
Sbjct: 410 SFAGNKNPQIKSSCFSLFSRSFSNMTSLP-SKFTVD 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,010
Number of Sequences: 5004
Number of extensions: 48059
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)