Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060170.seq
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0470 + 34164873-34165856,34166335-34166568,34166680-341670... 58 5e-09
04_04_0852 + 28724891-28725184,28725683-28725801,28726868-28727294 32 0.49
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 31 0.86
08_02_0009 + 11216532-11218687,11220727-11225998 31 0.86
08_02_0003 + 11180421-11180757,11180773-11185715 31 0.86
08_02_0002 + 11173365-11173512,11173528-11178470 31 1.1
11_05_0023 - 18447015-18447410,18448156-18448308,18448679-184495... 29 3.5
09_03_0010 - 11486996-11488073,11488704-11488838,11502017-11502429 29 3.5
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 28 6.0
02_05_0289 + 27567549-27567830,27568166-27568284,27569295-27569724 28 6.0
02_04_0591 - 24159654-24160155,24160233-24160316,24160898-241609... 28 6.0
12_02_0661 + 21644328-21644517,21644697-21644875,21644899-216459... 28 8.0
01_06_1629 - 38749184-38749303,38749389-38749479,38749555-387496... 28 8.0
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980... 28 8.0
>03_06_0470 +
34164873-34165856,34166335-34166568,34166680-34167006,
34168426-34168716
Length = 611
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/46 (54%), Positives = 31/46 (67%)
Frame = +1
Query: 508 AALQWLQPAQTFGGRKHPYLFSQCQPIHARSILXCQDTPFVKFTYD 645
+ALQWL P QT P++FSQCQ IHARS+ C DTP + T+D
Sbjct: 109 SALQWLSPPQTASSL--PFVFSQCQSIHARSVFPCHDTPAARITFD 152
>04_04_0852 + 28724891-28725184,28725683-28725801,28726868-28727294
Length = 279
Score = 31.9 bits (69), Expect = 0.49
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = -1
Query: 353 LSVHSNQGPHLRYLGAXXXXXXXXXXRLCFQNPVQR*SHMFYYSLFRPRK--GRRIQRTE 180
LS ++ H+ YL CF P S F L RP K GRR+ E
Sbjct: 132 LSTEESRFHHVAYLQQIWWLEVAGEIDFCF--PAGSYSLFFRLQLGRPHKYMGRRVYGYE 189
Query: 179 STHDWNL 159
S H WN+
Sbjct: 190 SIHGWNI 196
>11_03_0065 -
9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 31.1 bits (67), Expect = 0.86
Identities = 19/86 (22%), Positives = 41/86 (47%)
Frame = +2
Query: 248 VELDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYKLDDPVPNYGSK 427
+E++ EN N D+ L + D+ + + +++ +L D + N+G+K
Sbjct: 719 LEIELENLKNN----CDIKALPENKDIQNTEFKEQLITLKDSNTAKIIQLRDAITNFGNK 774
Query: 428 LTIQLPKRASSGDKLKIKIKYTTSPS 505
++LP + G ++ +K+K T S
Sbjct: 775 YIVRLPFKEILGIRIPVKVKLTPKVS 800
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 31.1 bits (67), Expect = 0.86
Identities = 20/86 (23%), Positives = 41/86 (47%)
Frame = +2
Query: 248 VELDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYKLDDPVPNYGSK 427
+E++ EN N D+ L + D+ + + +++ +L D + N+G+K
Sbjct: 1684 LEVELENLKNN----CDIKALPENKDIQNTEFKEQLITLKDSNTAKIIQLRDAITNFGNK 1739
Query: 428 LTIQLPKRASSGDKLKIKIKYTTSPS 505
++LP + G ++ +KIK T S
Sbjct: 1740 YIVRLPFKEILGIRIPVKIKLTPKVS 1765
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 31.1 bits (67), Expect = 0.86
Identities = 20/86 (23%), Positives = 41/86 (47%)
Frame = +2
Query: 248 VELDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYKLDDPVPNYGSK 427
+E++ EN N D+ L + D+ + + +++ +L D + N+G+K
Sbjct: 968 LEVELENLKNN----CDIKALPENKDIQNTEFKEQLITLKDSNTAKIIQLRDAITNFGNK 1023
Query: 428 LTIQLPKRASSGDKLKIKIKYTTSPS 505
++LP + G ++ +KIK T S
Sbjct: 1024 YIVRLPFKEILGIRIPVKIKLTPKVS 1049
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 392 KLDDPVPNYGSKLTIQLPKRASSGDKLKIKIKYTTSPS 505
+L D + N+G+K ++LP + G ++ +KIK T S
Sbjct: 949 QLRDAITNFGNKYIVRLPFKEILGIRIPVKIKLTPKVS 986
>11_05_0023 -
18447015-18447410,18448156-18448308,18448679-18449524,
18449688-18449702
Length = 469
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 431 TIQLPKRASSGDKLKIKIKYTTSPSALRY--NGYSQLKLSGEENILIYSASVSRFMPVRF 604
T+++ KRA S DKL I P L + G KL+ ++ + V R++ + F
Sbjct: 46 TLRIDKRAPSNDKLTIDFISRVDPIMLNHAGTGVKMFKLTTHPCFSLHPSYVDRWLQIAF 105
>09_03_0010 - 11486996-11488073,11488704-11488838,11502017-11502429
Length = 541
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/77 (20%), Positives = 35/77 (45%)
Frame = +2
Query: 308 LQDIGDVVLDSSELTIESIELDGAQLTYKLDDPVPNYGSKLTIQLPKRASSGDKLKIKIK 487
L+ +GDV D + +E D +L+Y DD + + ++ + S G K+
Sbjct: 47 LRKVGDVPSDQLDEQVELWARDVRELSYDADDVLDTFMVRVRVDDDNHGSKGMVSKVAAG 106
Query: 488 YTTSPSALRYNGYSQLK 538
+ + +R++ ++K
Sbjct: 107 FLGKAAKMRHDIADEIK 123
>11_01_0298 -
2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +2
Query: 290 TLDVDVLQDIGDVVLDSSELTIESIELDG--AQLTYKLDDPV-PNYGSKLTIQLPKRASS 460
TL + +LQ + D V+DS EL E E +G ++ Y++D GS+ + +A +
Sbjct: 453 TLKLRILQLLCDHVIDSEELKTELEEREGYSEEMEYEMDSSTFAEVGSRSVLTRGSKAPA 512
Query: 461 GDKL 472
KL
Sbjct: 513 CKKL 516
>02_05_0289 + 27567549-27567830,27568166-27568284,27569295-27569724
Length = 276
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = -1
Query: 353 LSVHSNQGPHLRYLGAXXXXXXXXXXRLCFQNPVQR*SHMFYYSLFRP--RKGRRIQRTE 180
L+ ++ H+ YL CF P S F L RP R GRRI TE
Sbjct: 128 LATEESRFHHIAYLQQIWWLEVDGELDFCF--PAGSYSIFFRLHLGRPYRRMGRRICGTE 185
Query: 179 STHDW 165
H W
Sbjct: 186 QVHGW 190
>02_04_0591 -
24159654-24160155,24160233-24160316,24160898-24160944,
24161035-24161103,24161259-24161310,24161693-24161775,
24162312-24162422,24162808-24163211,24163308-24163380,
24163460-24163510,24163882-24164073,24164176-24164302,
24164753-24164934,24165023-24165226,24165738-24165836
Length = 759
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = +2
Query: 356 ESIELDGAQLTYKLDDPVPNYGSKLTIQLPKRASSGDKLKIKIKYTTSPSALRYNGYSQL 535
E E + T K D +P GS + PK ASSG K +K + PS R +
Sbjct: 649 EGSEDKATKSTEKTKDDLPEDGSNKSASKPKEASSGGK---DLKGESKPSEGRAKPGRKP 705
Query: 536 KLSG 547
K++G
Sbjct: 706 KVAG 709
>12_02_0661 +
21644328-21644517,21644697-21644875,21644899-21645922,
21647108-21647262
Length = 515
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +3
Query: 408 CRTMAPN*LYNCRNEPQVAIS*KLKLSTQRPRPRCV-----TMVTASSNFRGKKTSLSIQ 572
C+ + N Y C+ + ++ S K+K+ P P C+ T+V + G + +L
Sbjct: 117 CQNVLSNWEYYCKKKRSISPSKKMKVDDSTPTPNCLRPLENTIVDGGTFAPGVQVALEEV 176
Query: 573 PVSADSCPFDS 605
V D C D+
Sbjct: 177 AVD-DHCSIDA 186
>01_06_1629 -
38749184-38749303,38749389-38749479,38749555-38749630,
38749860-38749932,38750488-38750580,38750827-38750883,
38751406-38751492,38751600-38751674,38751779-38751826
Length = 239
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +2
Query: 284 SATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYKLDDPVPNYGSKLTIQLPKR 451
SA +D V+ GDVVLD +E+T ++I+L GA L D +L + P +
Sbjct: 9 SALVDNHVVP--GDVVLDLTEMTNQTIKL-GAGLRQDCDTIQATSAGRLRLSKPNK 61
>01_06_0147 +
26997641-26997688,26997783-26997857,26997966-26998052,
26998566-26998622,26998867-26998959,26999528-26999600,
26999830-26999905,27000217-27000280,27000951-27000980,
27001251-27001367,27002742-27002782,27002870-27003176,
27003279-27003368,27003479-27003541,27003678-27003752,
27003922-27003984,27004714-27004784,27004885-27005068
Length = 537
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +2
Query: 284 SATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYKLDDPVPNYGSKLTIQLPKR 451
SA +D V+ GDVVLD +E+T ++I+L GA L D +L + P +
Sbjct: 9 SALVDNHVVP--GDVVLDLAEMTNQTIKL-GAGLRQDCDTIQATSAGRLRLSKPSK 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,544,030
Number of Sequences: 37544
Number of extensions: 304259
Number of successful extensions: 696
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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