Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060170.seq
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7564| Best HMM Match : Peptidase_M1 (HMM E-Value=6.8e-08) 76 2e-14
SB_45004| Best HMM Match : Peptidase_M1 (HMM E-Value=0.0054) 29 4.7
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 28 6.2
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_7666| Best HMM Match : Cps15 (HMM E-Value=0.93) 28 6.2
SB_16885| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_5166| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30) 28 8.1
>SB_7564| Best HMM Match : Peptidase_M1 (HMM E-Value=6.8e-08)
Length = 457
Score = 76.2 bits (179), Expect = 2e-14
Identities = 33/50 (66%), Positives = 41/50 (82%)
Frame = +1
Query: 508 AALQWLQPAQTFGGRKHPYLFSQCQPIHARSILXCQDTPFVKFTYDAEVT 657
+ALQWL P QT G+KHPY+F+QCQ IHARSI+ CQD+P VK TY A+V+
Sbjct: 63 SALQWLTPEQT-SGKKHPYMFTQCQAIHARSIIPCQDSPGVKATYSAKVS 111
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +2
Query: 329 VLDSSELTIESIEL--DGAQLTYKLDDPVPNYGSKLTIQLPKRASSGDKLKIKIKYTTSP 502
VLD+ +L ++S+ + QLT+ L +G+ L I LP SG +L I I Y TSP
Sbjct: 1 VLDTRDLNVQSVAVRPSNDQLTFSLGSKHKAFGTPLEISLPPGLKSGARLSIAISYRTSP 60
Query: 503 SALRYNGYSQLKLSGEENILIYS 571
A + + SG+++ +++
Sbjct: 61 DASALQWLTPEQTSGKKHPYMFT 83
>SB_45004| Best HMM Match : Peptidase_M1 (HMM E-Value=0.0054)
Length = 236
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 562 YLFSQCQPIHARSILXCQDTPFVKFTYDAEVT 657
Y+ SQ P ARS+ C D P K T++ ++
Sbjct: 70 YVASQFGPAEARSVFPCFDEPAFKATFNLTIS 101
>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 890
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 547 GRKHPYLFSQCQPIHARSILXCQDTPFVKFTYDAEVTGAP 666
G++ ++ +Q +P+ AR C D P +K T++ + P
Sbjct: 221 GQRVYFVATQFEPVKAREAFPCFDEPGMKATFNITIAHRP 260
>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 250 NDKVTCFITACSGREKEDGSRGLKAPMTGT*LKRDLVCFVCKPK--FIREC 104
+DK C+ +C +K SR K P +G RD+VC+ C F R+C
Sbjct: 23 DDKPVCY--SCG--KKGHISRDCKNPSSGGSRNRDVVCYRCNMSGHFARDC 69
>SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 884
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 216 EQAVIKHVTLSLNWILKTKS*TDPPLSTLTC--SKISEMWSLIR 341
E+ ++ TL NW TKS D P+ +C S + + + L+R
Sbjct: 382 EENLVNWQTLMSNWPSTTKSPIDSPMKYFSCGASSVKDRYRLLR 425
>SB_7666| Best HMM Match : Cps15 (HMM E-Value=0.93)
Length = 1062
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 362 IELDGAQLTYKLDDPVPNYGSKLTIQLPKRASSGDKLKIKIKYTTSPSAL-RYNGYSQLK 538
++ D A+L LD+ +P Y + +L K S K K TT+ AL + SQLK
Sbjct: 254 LDSDEAELKRVLDEQMPGYKEIIKAELQKHLDSAVSSIAKKKATTAVRALIKPPMTSQLK 313
Query: 539 LSGEENI 559
S +++
Sbjct: 314 SSFNKDV 320
>SB_16885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +2
Query: 311 QDIGDVVLD--SSELTIESIELDGAQLTYKLDDPVPNYGSKLTIQLPKRASSGDKLKIKI 484
+DI DVV+ +S LT++ + A LD+ N + +++P S +
Sbjct: 212 EDISDVVVQPYNSILTLKRLT-QNADCVVVLDNTALNRIAADRLRIPNPTFSQVNQLVST 270
Query: 485 KYTTSPSALRYNGYSQLKLSG 547
TS + LRY GY L G
Sbjct: 271 IMATSTTTLRYPGYMNNDLIG 291
>SB_5166| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 768
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 380 QLTYKLDDPVPNYGSKLTIQLPKRASSGDKLKIKIKYTTSPSALRYN 520
+L YKL++ + G L+ SS KI +K T P +LRY+
Sbjct: 38 ELEYKLENSLAMRGEDLSFDFSIDESSSIP-KIDVKVLTGPKSLRYS 83
>SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)
Length = 1405
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 308 LQDIGDVVLDSSELTIESIELDGAQLTYKLD 400
+Q GDV S E IE+DG +T+KLD
Sbjct: 113 VQKPGDVSKSSVEYWKAEIEVDGQPITFKLD 143
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,384,912
Number of Sequences: 59808
Number of extensions: 376713
Number of successful extensions: 1510
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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