Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060170.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.3  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 135 KQTRSRFSQVPVMGAFSPLDPSSFSRPEQAVIK 233
           K  R+RF  +P++ + +  DP  F  P + V++
Sbjct: 222 KSARTRFDILPLILSANGHDPDYFDIPNELVLE 254


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 666 WGPRDFGVISELY 628
           W P ++G ++ELY
Sbjct: 84  WDPAEYGGVTELY 96


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 174 GAFSPLDPSSFSRPEQAV 227
           GA S +DP ++  P QAV
Sbjct: 604 GARSYVDPHTYEDPNQAV 621


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 549 KKTSLSIQPVSADSCPFDSXMSRHSICKVHL*RRSHGGPREFTVL 683
           +K ++ +QPV +D       MS   ICK+     S  G  E  +L
Sbjct: 200 RKFNVPLQPVVSDPIFDKKAMSDLVICKLSHSNASVAGGMEMILL 244


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 549 KKTSLSIQPVSADSCPFDSXMSRHSICKVHL*RRSHGGPREFTVL 683
           +K ++ +QPV +D       MS   ICK+     S  G  E  +L
Sbjct: 200 RKFNVPLQPVVSDPIFDKKAMSDLVICKLSHSNASVAGGMEMILL 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,755
Number of Sequences: 438
Number of extensions: 3234
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)