Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060170.seq
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g13520.1 68418.m01561 peptidase M1 family protein similar to ... 68 5e-12
At3g44670.1 68416.m04804 disease resistance protein RPP1-Ws[A,C]... 34 0.10
At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-lik... 33 0.18
At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-lik... 33 0.18
At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-lik... 33 0.18
At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR... 33 0.23
At1g68280.1 68414.m07799 thioesterase-related contains domain si... 32 0.31
At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR... 32 0.41
At3g17630.1 68416.m02252 cation/hydrogen exchanger, putative (CH... 31 0.54
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi... 31 0.54
At4g10710.1 68417.m01751 transcriptional regulator-related simil... 30 1.3
At1g17910.1 68414.m02217 wall-associated kinase, putative contai... 29 2.9
At4g20450.1 68417.m02984 leucine-rich repeat protein kinase, put... 29 3.8
At3g10740.1 68416.m01293 glycosyl hydrolase family protein 51 si... 28 5.0
At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family pr... 27 8.8
At4g31100.1 68417.m04414 wall-associated kinase, putative 27 8.8
>At5g13520.1 68418.m01561 peptidase M1 family protein similar to
SP|P09960 Leukotriene A-4 hydrolase (EC 3.3.2.6) (LTA-4
hydrolase) {Homo sapiens}; contains Pfam profile
PF01433: Peptidase family M1
Length = 616
Score = 68.1 bits (159), Expect = 5e-12
Identities = 31/55 (56%), Positives = 37/55 (67%)
Frame = +1
Query: 508 AALQWLQPAQTFGGRKHPYLFSQCQPIHARSILXCQDTPFVKFTYDAEVTGAPGS 672
+ALQWL P QTF + HPY+++QCQ IHARSI CQDTP + YD V P S
Sbjct: 107 SALQWLSPLQTFS-KLHPYVYTQCQAIHARSIFPCQDTPAARIRYDV-VMNIPNS 159
>At3g44670.1 68416.m04804 disease resistance protein
RPP1-Ws[A,C]-like (TIR-NBS-LRR class), putative domain
signature TIR-NBS-LRR exists, suggestive of a disease
resistance protein. Closest Col-0 homolog to both RPP1
Ws-A and RPP1 Ws-C
Length = 872
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 419 GSKLTIQLPKRASSGDKLKIKIKYTTSPSALRYNGYSQLKLSGEE 553
G+++ RA+SGD LKIK+K ++ P+ LR+ L EE
Sbjct: 664 GTQVPACFNHRATSGDSLKIKLKESSLPTTLRFKACIMLVKVNEE 708
>At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1240
Score = 33.1 bits (72), Expect = 0.18
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +2
Query: 416 YGSKLTIQLPK----RASSGDKLKIKIKYTTSPSALRYNGYSQLKLSGEE 553
Y +IQ+P RA+SGD LKIK+K ++ P+ LR+ L EE
Sbjct: 1064 YAMLPSIQVPACFNHRATSGDYLKIKLKESSLPTTLRFKACIMLVKVNEE 1113
>At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 33.1 bits (72), Expect = 0.18
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +2
Query: 416 YGSKLTIQLPK----RASSGDKLKIKIKYTTSPSALRYNGYSQLKLSGEE 553
Y +IQ+P RA+SGD LKIK+K ++ P+ LR+ L EE
Sbjct: 1064 YAMLPSIQVPACFNHRATSGDYLKIKLKESSLPTTLRFKACIMLVKVNEE 1113
>At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 33.1 bits (72), Expect = 0.18
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +2
Query: 416 YGSKLTIQLPK----RASSGDKLKIKIKYTTSPSALRYNGYSQLKLSGEE 553
Y +IQ+P RA+SGD LKIK+K ++ P+ LR+ L EE
Sbjct: 1064 YAMLPSIQVPACFNHRATSGDYLKIKLKESSLPTTLRFKACIMLVKVNEE 1113
>At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1194
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 449 RASSGDKLKIKIKYTTSPSALRYNGYSQLKLSGEE 553
RA+SGD LKIK+K + P+ LR+ L EE
Sbjct: 1051 RATSGDSLKIKLKESPLPTTLRFKACIMLVKVNEE 1085
>At1g68280.1 68414.m07799 thioesterase-related contains domain
similarity with PF03061: thioesterase family protein
Length = 188
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +2
Query: 422 SKLTIQLPKRASSGDKLKIKIKYTTSPSALRYNGYSQLKLSGEENILIYSASV 580
S+LT+ SGDK +K+ + + +A Y +S LKL +E IL A+V
Sbjct: 106 SELTMNFLAPLRSGDKFVVKVNISRTSAARIYFDHSILKLPNQEVILEAKATV 158
>At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1007
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 449 RASSGDKLKIKIKYTTSPSALRYNGYSQLKLSGEE 553
RA+SGD LKIK+K + P+ LR+ L EE
Sbjct: 898 RATSGDYLKIKLKESPFPTTLRFKACIMLVKVNEE 932
>At3g17630.1 68416.m02252 cation/hydrogen exchanger, putative
(CHX19) similar to putative Na+/H+-exchanging protein
GB:CAA23036 from [Arabidopsis thaliana]; monovalent
cation:proton antiporter family 2 (CPA2) member,
PMID:11500563
Length = 857
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -1
Query: 467 YRHLRLVSAIV*SIWSHSSALGHLICTSIEHRLVLLILLSVHSNQ 333
Y+HLR V+ + S S++ ICTS + V +ILL H +Q
Sbjct: 588 YQHLRAVAVRPMTAISGLSSIHEDICTSAHQKRVAMILLPFHKHQ 632
>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
protein associated factor (GI:2827282) [Homo sapiens];
similar to Transcription initiation factor TFIID 150 kDa
subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
[Drosophila melanogaster]
Length = 1390
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 248 VELDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYK 394
+ +DF+ + + G L+V V DIG V L + L IES+ +DG ++
Sbjct: 32 LSIDFKKRQIYGYTELEVSV-PDIGIVGLHAENLGIESVLVDGEPTVFE 79
>At4g10710.1 68417.m01751 transcriptional regulator-related similar
to chromatin-specific transcription elongation factor
FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
Length = 1074
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +1
Query: 130 TQNKQGHASVKFQSWVLSVLWIRLPFRGLNKL 225
TQ K A KF+ LS LWIR PF G K+
Sbjct: 664 TQEKLQLAGNKFKPLRLSELWIRPPFSGRKKI 695
>At1g17910.1 68414.m02217 wall-associated kinase, putative contains
similarity to wall-associated kinase 4 GI:3355308 from
[Arabidopsis thaliana]
Length = 764
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 198 SSFSRPEQAVIKHVTLSLNWILKTKS*TDPPLSTLTCSKISEM 326
S+ + PEQ K VT+SL W ++TK+ L +L C E+
Sbjct: 258 SNATDPEQFFSKGVTVSLGWFIQTKN--HSFLQSLDCQNRGEL 298
>At4g20450.1 68417.m02984 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 898
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 245 IVELDFENKVLNGSATLDVDVLQDIGDVVLDSSELT 352
I +DF N LNG+ T D+ L + + L ++ LT
Sbjct: 432 ITSIDFSNFGLNGTITSDIQYLNQLQKLDLSNNNLT 467
>At3g10740.1 68416.m01293 glycosyl hydrolase family protein 51
similar to arabinoxylan arabinofuranohydrolase isoenzyme
AXAH-II from GI:13398414 [Hordeum vulgare]
Length = 678
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/69 (23%), Positives = 37/69 (53%)
Frame = +3
Query: 39 FRNKIAFFVPVRLINWKHSKVRHSLINFGLHTKQTRSRFSQVPVMGAFSPLDPSSFSRPE 218
++N ++ ++ +N+ + ++ GL R S+ V+ + + +D +SFS+PE
Sbjct: 566 WKNNGKDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSKKTVLTSTNVMDENSFSQPE 625
Query: 219 QAVIKHVTL 245
+ V+ H +L
Sbjct: 626 K-VVPHESL 633
>At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 307
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2
Query: 437 QLPKRASSGDKLKIKIKYTTSP 502
QL K+ SSG KIK K TTSP
Sbjct: 187 QLSKKPSSGTNGKIKPKATTSP 208
>At4g31100.1 68417.m04414 wall-associated kinase, putative
Length = 786
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 198 SSFSRPEQAVIK-HVTLSLNWILKTKS 275
S ++PEQ K + TLSL WI++T++
Sbjct: 248 SKLTKPEQLHAKRYATLSLGWIMQTRN 274
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,489,254
Number of Sequences: 28952
Number of extensions: 249842
Number of successful extensions: 705
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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