Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060169.seq
         (665 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7E684 Cluster: Putative uncharacterized protein; n=1; ...    36   0.88 
UniRef50_Q23JC5 Cluster: Putative uncharacterized protein; n=1; ...    36   1.2  
UniRef50_UPI00006D0DC6 Cluster: Dynein heavy chain family protei...    35   2.0  
UniRef50_Q89PB9 Cluster: Bll3563 protein; n=1; Bradyrhizobium ja...    34   3.5  
UniRef50_P54280 Cluster: DNA mismatch repair protein pms1; n=1; ...    33   6.2  
UniRef50_A0BX19 Cluster: Chromosome undetermined scaffold_133, w...    33   8.2  
UniRef50_A6RIJ2 Cluster: Putative uncharacterized protein; n=1; ...    33   8.2  

>UniRef50_A7E684 Cluster: Putative uncharacterized protein; n=1;
           Sclerotinia sclerotiorum 1980|Rep: Putative
           uncharacterized protein - Sclerotinia sclerotiorum 1980
          Length = 299

 Score = 35.9 bits (79), Expect = 0.88
 Identities = 23/61 (37%), Positives = 29/61 (47%)
 Frame = +1

Query: 4   TSEEIFADQTKSSSDTVDCSSMNSVIISNRVPDNNIIIDESSMSGAISNTESNVDTDSVI 183
           TSE      + SSSD+ D SS NS   S+   D+       S+S   S T SN + DS  
Sbjct: 188 TSESNSGSSSGSSSDSSDSSSSNSDSDSSSTTDSTATTPSPSVSSTSSGTSSNNNEDSSF 247

Query: 184 S 186
           S
Sbjct: 248 S 248


>UniRef50_Q23JC5 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1828

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -2

Query: 409 CVAS---CNVHGGGNSLFTKCGSCCKICDSTSSIIWINLNSHSSHLIERCSSMTVW 251
           CVAS   C+ H G N   T C +C  I  ST ++++ N++  S   ++ CS  + W
Sbjct: 645 CVASSGTCSRHSGWND--TDCNAC-HISTSTPTLLYANIDGSSCVAVQNCSRQSGW 697


>UniRef50_UPI00006D0DC6 Cluster: Dynein heavy chain family protein;
           n=1; Tetrahymena thermophila SB210|Rep: Dynein heavy
           chain family protein - Tetrahymena thermophila SB210
          Length = 7038

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +1

Query: 4   TSEEIFADQTKSSSDTVDCSSMNSVIISNRVPDNNIIIDESSMSG-AISNTESNVDTDSV 180
           + E+I  DQ +S           +VI   ++P N I +DESSM G    N   N   + +
Sbjct: 209 SQEDIKFDQDQSIMKDTTFQMNQTVINQTQIPANQIFVDESSMIGKKTDNLVDNTMINPI 268

Query: 181 ISYKMKFCREIKKPI 225
           +S++ +       PI
Sbjct: 269 LSFQTELDMRPSNPI 283


>UniRef50_Q89PB9 Cluster: Bll3563 protein; n=1; Bradyrhizobium
            japonicum|Rep: Bll3563 protein - Bradyrhizobium japonicum
          Length = 3441

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 15/55 (27%), Positives = 34/55 (61%)
 Frame = +1

Query: 31   TKSSSDTVDCSSMNSVIISNRVPDNNIIIDESSMSGAISNTESNVDTDSVISYKM 195
            T SS+ T+  +  N   ++  V D N  +++S+++G +++ +S+VD  + +SY +
Sbjct: 1625 TSSSTLTITLTGTNDAPVA--VADTNSGLEDSTITGTVASNDSDVDDGATLSYSL 1677



 Score = 32.7 bits (71), Expect = 8.2
 Identities = 15/55 (27%), Positives = 34/55 (61%)
 Frame = +1

Query: 31  TKSSSDTVDCSSMNSVIISNRVPDNNIIIDESSMSGAISNTESNVDTDSVISYKM 195
           T +SS T+  +  N   ++  V D N  +++S+++G +++ +S+VD  + +SY +
Sbjct: 725 TSNSSLTITLTGTNDGPVA--VADTNSGLEDSTITGTVASNDSDVDDGATLSYSL 777



 Score = 32.7 bits (71), Expect = 8.2
 Identities = 15/55 (27%), Positives = 34/55 (61%)
 Frame = +1

Query: 31   TKSSSDTVDCSSMNSVIISNRVPDNNIIIDESSMSGAISNTESNVDTDSVISYKM 195
            T SS+ T+  +  N   ++  V D N  +++S+++G +++ +S+VD  + +SY +
Sbjct: 1325 TSSSTLTITLTGTNDGPVA--VADTNSGLEDSTITGTVASNDSDVDDGATLSYSL 1377


>UniRef50_P54280 Cluster: DNA mismatch repair protein pms1; n=1;
           Schizosaccharomyces pombe|Rep: DNA mismatch repair
           protein pms1 - Schizosaccharomyces pombe (Fission yeast)
          Length = 794

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 34  KSSSDTVDCSSMNSVI-ISNRVPDNNIIIDESSMSGAISNTESNVDTDSVISYKMKFCR 207
           +S    + CS   S+   S+++PD++    +  +  +I  TES    DS  SYK   C+
Sbjct: 332 ESCGHAISCSRSQSIFSYSSQIPDSSGDSTDQELPQSIPATESETSDDSSFSYKRSPCK 390


>UniRef50_A0BX19 Cluster: Chromosome undetermined scaffold_133,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_133,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 518

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = +2

Query: 524 PSQYMEMYS----YGAYLIKALQDVNENCQDLKTASKHLKELLDD 646
           PSQ +E+++       +LI+  QD  +N ++LKT    +K+ LDD
Sbjct: 299 PSQLVEIFNDLEERNLFLIQTTQDAEQNLEELKTKFNKIKKSLDD 343


>UniRef50_A6RIJ2 Cluster: Putative uncharacterized protein; n=1;
           Botryotinia fuckeliana B05.10|Rep: Putative
           uncharacterized protein - Botryotinia fuckeliana B05.10
          Length = 173

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +3

Query: 273 LSMRCEEWLFRFIQIMEEVLSQILQQDPHFVNSEFPP--PWTLHEATQCIIKKFSHCCYV 446
           +S R E +L   + ++   +S I Q+ P + +++ P   PW L  +      K    CYV
Sbjct: 103 ISTRMEVYLLSCV-LLFWTMSCIGQRSPDYSDADHPSRMPWYLEHSCSIASTKNQAACYV 161

Query: 447 VDAANKLSIVL 479
             A+  L+IVL
Sbjct: 162 AQASYALTIVL 172


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 593,341,780
Number of Sequences: 1657284
Number of extensions: 11072916
Number of successful extensions: 30586
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30543
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)