Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060169.seq
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 33 0.037
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 27 1.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.4
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac... 27 3.2
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 3.2
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 5.6
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 25 7.4
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 25 7.4
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 7.4
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.8
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 33.1 bits (72), Expect = 0.037
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 34 KSSSDTVDCSSMNSVI-ISNRVPDNNIIIDESSMSGAISNTESNVDTDSVISYKMKFCR 207
+S + CS S+ S+++PD++ + + +I TES DS SYK C+
Sbjct: 332 ESCGHAISCSRSQSIFSYSSQIPDSSGDSTDQELPQSIPATESETSDDSSFSYKRSPCK 390
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 94 VPDNNIIIDESSMSGAISNTESNVDTDSVI 183
+ NN+++DES+M+G N + VD ++ I
Sbjct: 353 IESNNLVLDESAMTGETDNIK-KVDANTAI 381
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 31 TKSSSDTVDCSSMNSVIISNRVPDNNIIIDESS-MSGAISNTESNVDTDSVIS 186
+ SSS T SS +S IIS+ ++ SS +S + S++ S T S IS
Sbjct: 256 SSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTIS 308
>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +1
Query: 37 SSSDTVDCSSMN--SVIISNRVPDNNIIIDESSMSGAISNTESNVDTDSVISY 189
SSSD S+N S+ ++N NN+ + S NT +DT +V Y
Sbjct: 280 SSSDDSTFYSVNLESITVTNSTSSNNVQSSKRSSKDIEVNTTVTLDTGTVYIY 332
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 4 TSEEIFADQTKSSSDTVDCSSMNSVIISNRVPDNNIIIDES 126
TS I ++ T SS ++ S++ + IIS +D+S
Sbjct: 129 TSSSILSNSTIPSSSSISASTITTTIISGSTQFTTTFVDQS 169
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 145 SNTESNVDTDSVISYKMKFCREIKKPIQRN 234
S TE DTD +IS ++ R I++ Q+N
Sbjct: 541 SLTEDETDTDQIISSRLVVFRNIRELQQQN 570
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 130 MSGAISNTESNVDTDSVISYKMKFCREIKKPIQRNIMVDIP 252
M A+ SN D DS S+ + FC I Q+ + +DIP
Sbjct: 173 MQQAMMYYRSNED-DSQYSHPLDFCPIIDTEDQKVVAIDIP 212
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Frame = +1
Query: 319 WRKCYHKFYSRIRIL*IV----NFHHR 387
WR+C+ FY ++IL +V F HR
Sbjct: 278 WRECWSVFYETLKILSLVETRYEFEHR 304
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +1
Query: 43 SDTVDCSSMNSVIISNRVPDNNII 114
+DTVD +++ S+ SN+V +N++
Sbjct: 682 NDTVDVTTLPSIKFSNKVVKDNVV 705
>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 246 INHNVTLNRFLYLTTKFHFIANDAISINIAFC 151
I HN+ L FLYL +K ++ + S+ + FC
Sbjct: 62 ILHNICLASFLYL-SKCYYHTHILTSVRLDFC 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,267
Number of Sequences: 5004
Number of extensions: 52089
Number of successful extensions: 161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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