Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060169.seq
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302...    30   1.9  
01_01_0052 - 391398-391691,392243-392647                               29   2.5  
12_01_0715 - 6230393-6231559,6233234-6234553                           29   3.3  
10_06_0191 - 11631066-11631538,11632011-11632319,11632374-11632572     29   4.4  
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071...    29   4.4  

>03_05_0379 +
           23628200-23628366,23629074-23629133,23630177-23630209,
           23630253-23630665,23631522-23632008,23632623-23633334
          Length = 623

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -2

Query: 409 CVASCNVHGGGNSLFTKCGSC-CKICDSTSSII--WINLNSHS 290
           C      +GG N +  KCG C C +C + + +   W +++ HS
Sbjct: 365 CSKPIEKNGGCNHVRCKCGQCLCWLCGAATGLAHNWTSIDGHS 407


>01_01_0052 - 391398-391691,392243-392647
          Length = 232

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 309 IQIMEEVLSQILQQDPHFVNSEFPPPWTLH 398
           + I+E  + + L++DP F+ S  PPP  LH
Sbjct: 171 VAILESYI-EALEEDPSFLQSYIPPPHPLH 199


>12_01_0715 - 6230393-6231559,6233234-6234553
          Length = 828

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -3

Query: 417 LCTALLRVMS-TVVEIHYSQNADPAVKFVIALPPL 316
           +C +L  + S +V+E+HY+  + P  +F+ ALP L
Sbjct: 250 ICHSLSALRSLSVIELHYNHLSGPVPEFLAALPSL 284


>10_06_0191 - 11631066-11631538,11632011-11632319,11632374-11632572
          Length = 326

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 476 HYRQFIRSVYNITAVTKLLYYALRCFV*CPRW-WKFTI 366
           H R+F++  YN T     +YY   C V   +W WK  +
Sbjct: 272 HVRKFLKPFYNATVQLSGIYYPTACLV--LKWIWKLAL 307


>06_03_0740 -
           24006485-24006629,24006821-24006864,24006954-24007122,
           24007226-24007413,24007572-24007634,24007992-24008084,
           24009837-24009932,24010024-24010067,24010184-24010357,
           24010764-24010974
          Length = 408

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +1

Query: 22  ADQTKSSSDTVDCSSMNSVIISNRVPDNNIIIDESSMSGAISNTESNVDTDSVISYKM 195
           ++ TK  + T +C S  +     +VPD++  IDE++     +  E + D  S +  K+
Sbjct: 311 SESTKPITKTEECESFFNFFSPPQVPDDDAKIDENTAEELQNQMERDYDIASTLRDKI 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,608,338
Number of Sequences: 37544
Number of extensions: 293253
Number of successful extensions: 789
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)