Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060169.seq
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30275| Best HMM Match : EGF_CA (HMM E-Value=1.3e-13)                31   1.1  
SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7)               30   1.5  
SB_54864| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_14469| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)                       28   7.9  
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)                  28   7.9  

>SB_30275| Best HMM Match : EGF_CA (HMM E-Value=1.3e-13)
          Length = 142

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +3

Query: 282 RCEEWLFRFIQIMEEVLSQILQQDPHFVNSEFPPPWTLHEATQCIIKKFSHC 437
           RC  WLF+  ++  E L   L  D HF   E   P     A   I+K  + C
Sbjct: 25  RCLRWLFQDAELKAEGLQCELNSDTHFAFPEHFIPGRAPGAYYAIVKPVTKC 76


>SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7)
          Length = 2372

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
 Frame = +1

Query: 7    SEEIFADQTKSS-SDTVDCSSMNSVI---ISNRVPDNNI--IIDESSMSGAISNTESNVD 168
            S+ +    T S+ SDTV  +  +SVI   +S    D+ I   +  +    AISNTES   
Sbjct: 1867 SDMVSGAHTDSAISDTVSGAHTDSVIRDTVSGAHTDSAISDTVSGAHTDSAISNTESGAH 1926

Query: 169  TDSVI 183
            TDSVI
Sbjct: 1927 TDSVI 1931


>SB_54864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 300 FRFIQIMEEVLSQILQQDPHFVNSEFP 380
           F+ +QI  ++L Q L Q+PH  + +FP
Sbjct: 418 FKSLQISGKILKQFLLQNPHISSEQFP 444


>SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 658

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/67 (26%), Positives = 36/67 (53%)
 Frame = +1

Query: 28  QTKSSSDTVDCSSMNSVIISNRVPDNNIIIDESSMSGAISNTESNVDTDSVISYKMKFCR 207
           Q KSS +++  SS+++    NRVP+  +I D +  S + + + + + T +  S   K C 
Sbjct: 232 QGKSSFESIP-SSLSNTTSENRVPEIEVIPDSTDESDSPALSTTELTTRNSRSKPGKTCE 290

Query: 208 EIKKPIQ 228
             K+ ++
Sbjct: 291 GAKRILE 297


>SB_14469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 361 KCGSCCKICDSTSSIIWINLNSHSSHLIERCS 266
           KCG C K C   S+ + I+L +HS H   +C+
Sbjct: 114 KCGQCGK-CFDRSTSLKIHLLTHSGHKPHQCN 144


>SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)
          Length = 1649

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = +1

Query: 97  PDNNIIIDESSMSGAISNTESNVDTDSVISYKMKFCREIKKPIQRNIMVDIPRRS*KNTF 276
           P +N   +E ++       E   D D++  + +    EI+ P  RN   DI + + K  +
Sbjct: 679 PADNWEQEEGTLGAESYANEPLFDMDALSQFPVD---EIESPEVRNGDKDIGKSTPKKNY 735

Query: 277 Q*DAKNGYSDLSK*WRKC 330
              A  G SDLS    KC
Sbjct: 736 VKSASKGTSDLSSFQMKC 753


>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
          Length = 933

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 569 KALQDVNENCQDLKTASKHLKELLDDIYNPH 661
           K + D+  N +DLK++   +K+  DD  N H
Sbjct: 310 KEIPDMRNNLKDLKSSINEVKKQTDDSQNSH 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,753,697
Number of Sequences: 59808
Number of extensions: 361082
Number of successful extensions: 1023
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)