Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060169.seq
(665 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39646-7|AAA80371.1| 623|Caenorhabditis elegans Hypothetical pr... 30 1.7
U39646-6|AAK72058.1| 624|Caenorhabditis elegans Hypothetical pr... 30 1.7
U39646-5|AAK72057.1| 678|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z46242-5|CAA86330.2| 364|Caenorhabditis elegans Hypothetical pr... 29 2.2
U19861-1|AAA97554.2| 364|Caenorhabditis elegans mab-21 protein ... 29 2.2
Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical pr... 29 3.0
AL032635-3|CAB63374.1| 635|Caenorhabditis elegans Hypothetical ... 29 3.0
AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical ... 29 3.9
Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 27 9.1
U41264-7|AAA82427.2| 819|Caenorhabditis elegans Hypothetical pr... 27 9.1
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 27 9.1
AF125964-5|AAP13765.1| 722|Caenorhabditis elegans Hypothetical ... 27 9.1
AF125964-2|AAD14754.1| 726|Caenorhabditis elegans Hypothetical ... 27 9.1
AF100307-11|AAC68929.1| 304|Caenorhabditis elegans Hypothetical... 27 9.1
AF067608-10|AAC17650.1| 261|Caenorhabditis elegans Hypothetical... 27 9.1
>U39646-7|AAA80371.1| 623|Caenorhabditis elegans Hypothetical
protein F47B7.2a protein.
Length = 623
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 270 HLSMRCEE---WLFRFIQIMEEVLSQILQQDPHFVNSEFPP 383
HL R E+ WL+R + + LS L DP F +FPP
Sbjct: 479 HLVTRPEDVYAWLWRVHNFVNKRLSGSLTDDPSFKKQQFPP 519
>U39646-6|AAK72058.1| 624|Caenorhabditis elegans Hypothetical
protein F47B7.2c protein.
Length = 624
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 270 HLSMRCEE---WLFRFIQIMEEVLSQILQQDPHFVNSEFPP 383
HL R E+ WL+R + + LS L DP F +FPP
Sbjct: 479 HLVTRPEDVYAWLWRVHNFVNKRLSGSLTDDPSFKKQQFPP 519
>U39646-5|AAK72057.1| 678|Caenorhabditis elegans Hypothetical
protein F47B7.2b protein.
Length = 678
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 270 HLSMRCEE---WLFRFIQIMEEVLSQILQQDPHFVNSEFPP 383
HL R E+ WL+R + + LS L DP F +FPP
Sbjct: 479 HLVTRPEDVYAWLWRVHNFVNKRLSGSLTDDPSFKKQQFPP 519
>Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical
protein M79.1b protein.
Length = 1214
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1
Query: 31 TKSSSDTVDCSSMNSVIISNRVPDNNIIIDESSMSGAI 144
++S D V CSSMNSV N V D N + SS S +
Sbjct: 75 SQSREDLVACSSMNSV---NNVHDMNTVSSSSSSSAPL 109
>Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical
protein M79.1a protein.
Length = 1224
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1
Query: 31 TKSSSDTVDCSSMNSVIISNRVPDNNIIIDESSMSGAI 144
++S D V CSSMNSV N V D N + SS S +
Sbjct: 85 SQSREDLVACSSMNSV---NNVHDMNTVSSSSSSSAPL 119
>Z46242-5|CAA86330.2| 364|Caenorhabditis elegans Hypothetical
protein F35G12.6 protein.
Length = 364
Score = 29.5 bits (63), Expect = 2.2
Identities = 9/35 (25%), Positives = 23/35 (65%)
Frame = +3
Query: 267 EHLSMRCEEWLFRFIQIMEEVLSQILQQDPHFVNS 371
+H +R + + R ++++E+L ++ Q+P F+N+
Sbjct: 21 QHRKVRVTKTVQRIAKVVQEILKEVEAQEPRFINT 55
>U19861-1|AAA97554.2| 364|Caenorhabditis elegans mab-21 protein
protein.
Length = 364
Score = 29.5 bits (63), Expect = 2.2
Identities = 9/35 (25%), Positives = 23/35 (65%)
Frame = +3
Query: 267 EHLSMRCEEWLFRFIQIMEEVLSQILQQDPHFVNS 371
+H +R + + R ++++E+L ++ Q+P F+N+
Sbjct: 21 QHRKVRVTKTVQRIAKVVQEILKEVEAQEPRFINT 55
>Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical
protein C28A5.2 protein.
Length = 1218
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 28 QTKSSSDTVDCSSMNSVIISNRVPDNNIIIDESSMSGAISNTESNVDTDSVIS 186
++ S++ T N S D+NI+I ES + ++E+ +DT +I+
Sbjct: 619 ESSSAASTCTVIDRNDARFSALNDDSNILISESWLDSTNQHSETTMDTPEIIT 671
>Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical
protein C28A5.1 protein.
Length = 1223
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 28 QTKSSSDTVDCSSMNSVIISNRVPDNNIIIDESSMSGAISNTESNVDTDSVIS 186
++ S++ T N S D+NI+I ES + ++E+ +DT +I+
Sbjct: 619 ESSSAASTCTVIDRNDARFSALNDDSNILISESWLDSTNQHSETTMDTPEIIT 671
>AL032635-3|CAB63374.1| 635|Caenorhabditis elegans Hypothetical
protein Y51A2A.5 protein.
Length = 635
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 25 DQTKSSSDTVDCSSMNSVIISNRVPDNNIIIDESSMSGAISNTESNVDTDSVIS 186
+ K + ++C + N ++++ V D+NIII + + + D D IS
Sbjct: 343 EMDKVEEECINCDTYNKEVLNDLVTDSNIIISRFPEDEDVKDKRTFEDKDESIS 396
>AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical
protein Y26D4A.14 protein.
Length = 952
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 76 VIISNRVPDNNIIIDESSMSGAISNTESNVDTDSV 180
VII+ + D ++D SNTESN+ T S+
Sbjct: 653 VIITPKKEDKIELVDNIKTDNTTSNTESNIKTSSI 687
>Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical
protein M79.1c protein.
Length = 1209
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +1
Query: 37 SSSDTVDCSSMNSVIISNRVPDNNIIIDESSMSGAI 144
S D V CSSMNSV N V D N + SS S +
Sbjct: 72 SLEDLVACSSMNSV---NNVHDMNTVSSSSSSSAPL 104
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 1 GTSEEIFADQTKSSSDTVDCSSMNSVIISNRVPDNNI--IIDESSMSGAISNTESNVDTD 174
G+ EE Q T+ C S ++ N ++ I+++ + N + N+ T+
Sbjct: 160 GSDEECTTSQFACQCGTIKCVSDTFIMDGNWDCEDGSDEFINKTLTANCTRNNKVNIATN 219
Query: 175 SVISYKMKFC 204
S+ K+KFC
Sbjct: 220 SLSLGKLKFC 229
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 1 GTSEEIFADQTKSSSDTVDCSSMNSVIISNRVPDNNI--IIDESSMSGAISNTESNVDTD 174
G+ EE Q T+ C S ++ N ++ I+++ + N + N+ T+
Sbjct: 160 GSDEECTTSQFACQCGTIKCVSDTFIMDGNWDCEDGSDEFINKTLTANCTRNNKVNIATN 219
Query: 175 SVISYKMKFC 204
S+ K+KFC
Sbjct: 220 SLSLGKLKFC 229
>U41264-7|AAA82427.2| 819|Caenorhabditis elegans Hypothetical
protein F10E7.4 protein.
Length = 819
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 303 RFIQIMEEVLSQILQQDPHFVNSEFPPPWTLHEATQCIIKKFSHC 437
RFI+I E + Q +Q + FP W HE TQC F+ C
Sbjct: 612 RFIEINSEEICQEDKQAGQCAGN-FPRYWYNHEKTQCERFIFTGC 655
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
cell adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 1 GTSEEIFADQTKSSSDTVDCSSMNSVIISNRVPDNNI--IIDESSMSGAISNTESNVDTD 174
G+ EE Q T+ C S ++ N ++ I+++ + N + N+ T+
Sbjct: 160 GSDEECTTSQFACQCGTIKCVSDTFIMDGNWDCEDGSDEFINKTLTANCTRNNKVNIATN 219
Query: 175 SVISYKMKFC 204
S+ K+KFC
Sbjct: 220 SLSLGKLKFC 229
>AF125964-5|AAP13765.1| 722|Caenorhabditis elegans Hypothetical
protein W03G1.6b protein.
Length = 722
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 25 DQTKSSSDTVDCSSMNSVI-ISNRVPDNNIIIDESSMSGAISNTESNVDTDSVISY 189
D++ D D SS++S IS R+ N ++ DESS S + + D +SY
Sbjct: 367 DKSGLEDDDSDPSSISSSSDISARLKKNCVVSDESSSSRFVKPMSPAAEKDKKMSY 422
>AF125964-2|AAD14754.1| 726|Caenorhabditis elegans Hypothetical
protein W03G1.6a protein.
Length = 726
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 25 DQTKSSSDTVDCSSMNSVI-ISNRVPDNNIIIDESSMSGAISNTESNVDTDSVISY 189
D++ D D SS++S IS R+ N ++ DESS S + + D +SY
Sbjct: 367 DKSGLEDDDSDPSSISSSSDISARLKKNCVVSDESSSSRFVKPMSPAAEKDKKMSY 422
>AF100307-11|AAC68929.1| 304|Caenorhabditis elegans Hypothetical
protein T12B5.3 protein.
Length = 304
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 607 KILTIFINVLQSLDQVSTIAVHFHILRRIYFRNILPF 497
K +T FIN L++ D + +HF+ L +ILPF
Sbjct: 129 KFITSFINFLKAKDCIHVKEIHFNRLLFDDILSILPF 165
>AF067608-10|AAC17650.1| 261|Caenorhabditis elegans Hypothetical
protein B0511.3 protein.
Length = 261
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 276 SMRCEEWLFRFIQIMEEVLSQILQQD 353
S +C++W+ R +++M E+LS + D
Sbjct: 75 SDKCDDWVSRSVRVMAEMLSSSIYPD 100
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,269,067
Number of Sequences: 27780
Number of extensions: 290355
Number of successful extensions: 886
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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