Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060169.seq
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42600.1 68416.m04422 hypothetical protein                          30   1.6  
At5g55820.1 68418.m06956 expressed protein                             29   2.1  
At1g23230.1 68414.m02906 expressed protein                             28   6.4  

>At3g42600.1 68416.m04422 hypothetical protein
          Length = 219

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 354 PHFVNSEFPPPWTLHEATQCIIKKFSHCCYVVDAANKLSIVL 479
           P+    + PP  T      C  KK  +CCY+   A +LSI+L
Sbjct: 178 PNSHGIQTPPCATYCYMVSCPFKKNCNCCYLRWCAKRLSIIL 219


>At5g55820.1 68418.m06956 expressed protein
          Length = 1826

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = +1

Query: 22  ADQTKSSSDTVDCSSMNSVIISNRVPDNNIIIDESSMSGAISNTESNVDTDSVI 183
           +DQ+K + + VD +  +S   + RV    I  DE++ +GAI ++ S ++  S +
Sbjct: 575 SDQSKETGECVDTNRCSS---AERVSQTGISPDETTFAGAIQDSISQIELLSFV 625


>At1g23230.1 68414.m02906 expressed protein
          Length = 1615

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 236 LWLIYPDGHRRTPFNEMRRMAIQIYPN 316
           +WL+  +G  R PF E+ R  +Q   N
Sbjct: 295 IWLLVEEGESRIPFYELLRSGLQFIEN 321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,068,358
Number of Sequences: 28952
Number of extensions: 252210
Number of successful extensions: 660
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)