Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060167.seq
         (534 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    27   0.079
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    25   0.55 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    25   0.55 
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   2.2  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   3.9  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   5.2  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   5.2  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 0.079
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 418 PSRQPPXAESGLGGSVAATGVPALVQARGHILKKI 522
           P    P   SGLGG ++   +PAL    GH L+ +
Sbjct: 76  PYAPHPSLSSGLGGGLSGMPMPALGFGLGHPLESV 110


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 24.6 bits (51), Expect = 0.55
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 438 SGERPWRQRCCYRRPSARSG*RTHI 512
           SGE+P+R   C RR S  S   TH+
Sbjct: 45  SGEKPFRCPVCDRRFSQSSSVTTHM 69



 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 417 TVASTSXSGERPWRQRCCYRRPSARSG*RTHI 512
           T    + SGERP+R R C +  S  S    H+
Sbjct: 66  TTHMRTHSGERPYRCRLCKKAFSDSSTLTKHL 97


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.6 bits (51), Expect = 0.55
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 438 SGERPWRQRCCYRRPSARSG*RTHI 512
           SGE+P+R   C RR S  S   TH+
Sbjct: 301 SGEKPFRCPVCDRRFSQSSSVTTHM 325



 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 417 TVASTSXSGERPWRQRCCYRRPSARSG*RTHI 512
           T    + SGERP+R R C +  S  S    H+
Sbjct: 322 TTHMRTHSGERPYRCRLCKKAFSDSSTLTKHL 353


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 438 SGERPWRQRCCYRRPSARSG*RTHI 512
           +GERP++ + C R  + +   +TH+
Sbjct: 158 TGERPFKCKICGRAFTTKGNLKTHM 182


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 156 PVRVQGAHPSGPGQ*CSRFYVQELEAALLRD 248
           PVR+ G H  G    C++      E AL  D
Sbjct: 196 PVRIMGVHRPGFDNDCNKNTSTSKEIALNND 226


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
 Frame = -2

Query: 353 HPDRTYEYH---HHGHAEFGRQHVQYPMIQHWFG 261
           HP  T+ YH   H+    F   H  +      FG
Sbjct: 158 HPGMTFRYHFNVHNSGTHFWHSHSGFQRSDGTFG 191


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 142 HPAPSHSSLNTPTL 101
           HPA +HS+L +P +
Sbjct: 121 HPAAAHSALLSPAM 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,679
Number of Sequences: 336
Number of extensions: 2410
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)