Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060167.seq
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   120   1e-28
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   120   1e-28
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    29   0.58 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   1.3  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   3.1  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   4.1  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   7.1  
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe...    25   7.1  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    25   7.1  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   9.4  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    25   9.4  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  120 bits (290), Expect = 1e-28
 Identities = 51/59 (86%), Positives = 54/59 (91%)
 Frame = +2

Query: 254 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVN 430
           AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH +VN
Sbjct: 58  AGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVN 116



 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 31/56 (55%), Positives = 40/56 (71%)
 Frame = +1

Query: 82  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVT 249
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY V+
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVS 55



 Score = 32.3 bits (70), Expect = 0.047
 Identities = 13/27 (48%), Positives = 22/27 (81%)
 Frame = +1

Query: 451 LGGSVAATGVPALVQARGHILKKISEL 531
           +  +VAA+GVP+L+ ARGH +++I E+
Sbjct: 124 IASAVAASGVPSLLLARGHRIEEIPEV 150


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  120 bits (290), Expect = 1e-28
 Identities = 51/59 (86%), Positives = 54/59 (91%)
 Frame = +2

Query: 254 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVN 430
           AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH +VN
Sbjct: 58  AGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVN 116



 Score = 68.5 bits (160), Expect = 6e-13
 Identities = 32/56 (57%), Positives = 40/56 (71%)
 Frame = +1

Query: 82  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVT 249
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY V+
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVS 55



 Score = 32.3 bits (70), Expect = 0.047
 Identities = 13/27 (48%), Positives = 22/27 (81%)
 Frame = +1

Query: 451 LGGSVAATGVPALVQARGHILKKISEL 531
           +  +VAA+GVP+L+ ARGH +++I E+
Sbjct: 124 ISSAVAASGVPSLLLARGHRIEEIPEV 150


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 208 VSMSKNSRQPYCVTRSWSPNQC*IMGYWT 294
           V + K S +P C++ +WSP+   +   WT
Sbjct: 275 VGVGKKSSEPECISLTWSPDGQTLFSGWT 303


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +1

Query: 382 YVRPHEALAALAPSRQPPXAESGLGGSVAATGVPALVQARGH 507
           +  PH  L + AP  QP   E     +V     P+    +GH
Sbjct: 854 FYEPHSYLESPAPEPQPSYEEESFNATVIHAPTPSTATFQGH 895


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 143 APCTVSLFSEYTDTKGRATDRLISLL 66
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -3

Query: 100 KVG-LPIDSFRYFSEAIPLKY-TLIAVI 23
           K+G LP+ SF Y +  +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 314  AEFGRQHVQYPMIQHWFGDQLLVTQ 240
            A+F   H Q   ++ W GD  L+TQ
Sbjct: 1138 ADFETTHAQIMEMKPWVGDTSLITQ 1162


>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
 Frame = +2

Query: 191 WSMMFTFLCPRTRGSPTA*QGAGHQTSAESWGTGRAVARI-PRVRGGGTHRSGQGAFG 361
           WS MFT   P     P     A   T    +G G  +AR+  R  GG         +G
Sbjct: 350 WSYMFTTASPTLTDDPHDIVSANSTTPMAGFGFGLPLARLYTRYFGGDLELISMEGYG 407


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 212 LCPRTRGSPTA*QGAGHQTSAESWGTGRAVARIPRVRGGGTHRSG 346
           + PR R +PTA   AG    A++    +  A++  +R   + +SG
Sbjct: 376 VAPRVRLNPTAMTIAGRMKPADTEQVRKLKAKMKAIRSKSSKKSG 420


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 81  SIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGP 191
           SI SP+ SVG   +  D +  S + P+ + G     P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +2

Query: 224 TRGSPTA*QGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 364
           TRGS         Q S +    GR   R  R RGG  +RS +G + N
Sbjct: 345 TRGSSKRPSVNRSQGSGQRGRGGRGFYRGGRGRGGFFNRSKRGQYSN 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,032,743
Number of Sequences: 5004
Number of extensions: 38081
Number of successful extensions: 107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)