Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060167.seq
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 129 2e-30
07_01_0578 + 4295386-4296489,4297394-4297507 128 2e-30
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.083
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 30 1.0
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 1.3
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 29 1.8
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 29 3.1
02_04_0457 + 23093020-23093343,23093798-23093806 29 3.1
04_01_0208 + 2596110-2596928 28 4.1
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 5.4
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 28 5.4
01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078 28 5.4
06_03_0347 + 19783824-19784348 27 7.2
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 27 7.2
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 27 7.2
11_07_0002 - 27171791-27172222 27 9.5
11_01_0748 + 6299776-6300042 27 9.5
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 27 9.5
09_06_0153 - 21243108-21245660 27 9.5
09_02_0279 + 6702517-6702948 27 9.5
06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641... 27 9.5
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 27 9.5
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 129 bits (311), Expect = 2e-30
Identities = 55/59 (93%), Positives = 57/59 (96%)
Frame = +2
Query: 254 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVN 430
AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHRRVN
Sbjct: 61 AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVN 119
Score = 50.4 bits (115), Expect = 9e-07
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +1
Query: 85 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTR 252
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY V+R
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSR 59
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 451 LGGSVAATGVPALVQARGHILKKISE 528
+ ++AAT VP+LV ARGH ++ + E
Sbjct: 127 VASALAATAVPSLVLARGHRIEGVPE 152
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 128 bits (310), Expect = 2e-30
Identities = 54/59 (91%), Positives = 57/59 (96%)
Frame = +2
Query: 254 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVN 430
AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WHRRVN
Sbjct: 62 AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVN 120
Score = 48.8 bits (111), Expect = 3e-06
Identities = 43/149 (28%), Positives = 62/149 (41%), Gaps = 3/149 (2%)
Frame = +1
Query: 94 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVT-RSWSP 264
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY V+ R+
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 265 NQC*IMGYWTCCRPNSACPWWWYS*VRSGCLR*HVSWWTYVRPHEALAALAPSRQPPXAE 444
G P G P +
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRR 125
Query: 445 SGLGGSVAATGVPALVQARGHILKKISEL 531
+ ++AAT VP+LV ARGH ++ + EL
Sbjct: 126 VAVASALAATSVPSLVLARGHRIETVPEL 154
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.083
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 272 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 382
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = +3
Query: 57 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 212
ASL N + P+F V G SQA V + GAH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 377 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 270
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 57 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 212
ASL N I +PTF +G + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = +2
Query: 221 RTRGSPTA*QGAGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGRM 385
+ G+ + +G G S S G++V + + R+R H G G+ G++ + GG+M
Sbjct: 65 KVSGAKSTDEGGGSDKSKGS-EVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGKM 123
Query: 386 FAPTKP-WR 409
P P WR
Sbjct: 124 LRPGFPKWR 132
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 257 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 361
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>04_01_0208 + 2596110-2596928
Length = 272
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Frame = +2
Query: 248 QGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAF-GNMCRGGRMFAPTKP-WRRWHR 421
+G G + E GR GGG + A G R +P WRRW R
Sbjct: 120 RGGGCEAEGEDGAAGRRSGEEGEAAGGGRRGGKRRAMAGTRLRRSPCETEGRPGWRRWRR 179
Query: 422 R 424
R
Sbjct: 180 R 180
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 398 SWGRTYVHHDTCYRRHPDRTYEYHH 324
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -2
Query: 341 TYEYHH-HGHAEFGRQHVQYPMIQH 270
T+++HH HGH FGR H +P H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHH 166
>01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078
Length = 455
Score = 27.9 bits (59), Expect = 5.4
Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Frame = +2
Query: 239 TA*QGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ--GAFGNMCRGGRMFAPTKPWRR 412
TA G G S S G + GGG R G GA G + GG + WRR
Sbjct: 70 TATVGGGDDGSGHSGGRSSPPGWLRPAGGGGRRRGGHGGGAGGGVGAGG----GAEWWRR 125
Query: 413 W 415
W
Sbjct: 126 W 126
>06_03_0347 + 19783824-19784348
Length = 174
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 221 RTRGSPTA*QGAGHQTSAESWGTGRA--VARIPRVRGGGTHRSGQGAFGNMCRG 376
R R A +GAG E G G A A+IP G+ R G G ++C G
Sbjct: 54 RRRAPVVAAEGAGSVGGREDDGRGVADVAAKIPEFAYAGSARHGGGGECSVCLG 107
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 391 PHEALAALAPSRQPPXAESGLGGSVAATGVPA 486
P A +AP PP G+GG G PA
Sbjct: 1175 PPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPA 1206
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 350 PDRTYEYHHHGHAEFGRQHVQYPMIQH 270
P + +HHHGH G H Q QH
Sbjct: 33 PQEHHHHHHHGH--HGHHHEQQQQQQH 57
>11_07_0002 - 27171791-27172222
Length = 143
Score = 27.1 bits (57), Expect = 9.5
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 218 PRTRGSPTA*QGAGHQTSAESWGTGRAVARIPRVRG---GGTHRSGQGAFGNMCRGGRMF 388
P + GSP G+G ++SA S + RA + VRG G G G+ GGR F
Sbjct: 43 PTSGGSPG---GSGTRSSAASTSSARAGSTPAGVRGSPAGAGGSPGGGSGSTPVGGGRSF 99
Query: 389 A 391
A
Sbjct: 100 A 100
>11_01_0748 + 6299776-6300042
Length = 88
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 251 GAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 379
G G + E+ G GRAVA + R H +G GA GG
Sbjct: 27 GGGDDGAVETGGGGRAVAALARCWRRRWHGAGGGAGAVEAGGG 69
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +3
Query: 57 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 212
ASL N I +PT +G + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>09_06_0153 - 21243108-21245660
Length = 850
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 143 APCTVSLFSEYTDTKGRATDRLISLL*RSYTSEIYTNSGDK 21
APCTV +F++ +G A+ RL + + S + N GD+
Sbjct: 612 APCTVGVFADRPFWRGGASFRLPTKISTSEETTAARNQGDQ 652
>09_02_0279 + 6702517-6702948
Length = 143
Score = 27.1 bits (57), Expect = 9.5
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 218 PRTRGSPTA*QGAGHQTSAESWGTGRAVARIPRVRG---GGTHRSGQGAFGNMCRGGRMF 388
P + GSP G+G ++SA S + RA + VRG G G G+ GGR F
Sbjct: 43 PTSGGSPG---GSGTRSSAASTSSARAGSTPAGVRGSPAGAGGSPGGGSGSTPVGGGRSF 99
Query: 389 A 391
A
Sbjct: 100 A 100
>06_03_0499 +
21461608-21463427,21463517-21463627,21463867-21464143,
21464265-21464353,21464508-21464595,21464698-21464907,
21464985-21465110,21465429-21465620,21466532-21467188
Length = 1189
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/50 (28%), Positives = 18/50 (36%)
Frame = +2
Query: 191 WSMMFTFLCPRTRGSPTA*QGAGHQTSAESWGTGRAVARIPRVRGGGTHR 340
WS ++TF C R+ S G G S G R+ HR
Sbjct: 14 WSKLYTFACFRSSHSNNEAAGGGPAAEGGSAVGGPGFTRVVHCNNSAVHR 63
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 148 WLHPAPSHSSLN-TPTLKVGLPIDSF 74
WL P P+H ++N L + +P+D F
Sbjct: 871 WLKPTPAHVAMNPAEALAMQIPVDHF 896
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,251,593
Number of Sequences: 37544
Number of extensions: 344367
Number of successful extensions: 1368
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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