Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060167.seq
(534 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 130 7e-31
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 33 0.11
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 33 0.15
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 31 0.45
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 30 1.4
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 29 3.2
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 28 4.2
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 28 4.2
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 4.2
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 28 5.5
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 28 5.5
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17) 28 5.5
SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12) 27 7.3
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 130 bits (314), Expect = 7e-31
Identities = 55/59 (93%), Positives = 57/59 (96%)
Frame = +2
Query: 254 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVN 430
AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH +VN
Sbjct: 55 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVN 113
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/54 (53%), Positives = 39/54 (72%)
Frame = +1
Query: 91 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTR 252
ARP+++V++E E+ LP VFKAPIRPDLVN VH +++KN RQPY V +
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNK 53
Score = 31.9 bits (69), Expect = 0.34
Identities = 12/24 (50%), Positives = 21/24 (87%)
Frame = +1
Query: 460 SVAATGVPALVQARGHILKKISEL 531
++AA+ +PAL+ ARGH ++KI+E+
Sbjct: 124 ALAASALPALIMARGHRIEKIAEV 147
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 377 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWF 264
HH CY H Y Y+ H H + R H YP +H++
Sbjct: 20 HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 383 YVHHDTCYRRHPDRTYEYHHHGH 315
Y HH CY RH + Y HH H
Sbjct: 25 YCHHRYCYYRHHHYCW-YRHHYH 46
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 33.1 bits (72), Expect = 0.15
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 218 PRTRGSPTA*QGAGHQTSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 382
P R SP+ T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 967 PSHRSSPSTPGSPSIPTPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 32.7 bits (71), Expect = 0.19
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 362 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQ 255
Y +HP T+ YHH H + ++ Q+P + H + Q
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRYHQQ 447
Score = 31.9 bits (69), Expect = 0.34
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 362 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 270
Y +HP T+ YH H R H Q+P + H
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 353 HPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQLLVT 243
HP T+ YH H R H Q+P + H + VT
Sbjct: 406 HPQVTHRYHQHPQLTH-RYHHQHPQVIHRYHQHPQVT 441
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -2
Query: 362 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 270
Y +HP T+ YH R Q+P + H
Sbjct: 242 YHQHPQVTHRYHQQHPQVTHRYQYQHPQVTH 272
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 31.5 bits (68), Expect = 0.45
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 377 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 294
HH RH R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = -2
Query: 389 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHV-QYPMIQHWFGDQLLVT 243
R + HH + H + +HHH H H Y H + ++T
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHHYHHHHHHHNNNTIIT 258
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 386 TYVHHDTCYRRHPDRTYEYHHHGHA 312
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/54 (33%), Positives = 21/54 (38%)
Frame = +2
Query: 251 GAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 412
G Q WG G+ + R GGG R G +G M GG P W R
Sbjct: 14 GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +2
Query: 284 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 412
G GR + R P GGG R G +G M GG P W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 28.3 bits (60), Expect = 4.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 377 HHDTCYRRHPDRTYEYHHH 321
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 158 GRGLAAPCTVSLFSEYTDTKGRATDRLI 75
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 383 YVHHDTCYRRHPDRTYEYHHHGH 315
Y HH +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 377 HHDTCYRRHPDRTYEYHHH 321
HH + RH R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 377 HHDTCYRRHPDRTYEYHHHGH 315
HH + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -2
Query: 365 CYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 270
CY + + + YHHH H H Q+ H
Sbjct: 246 CYHKLKNPRHRYHHHHHHHHQHNHHQHHHHHH 277
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -2
Query: 383 YVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQ 288
Y HH + +H + +HHH H H Q
Sbjct: 257 YHHHHHHHHQHNHHQHHHHHHHHHHNHHHHHQ 288
>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
Length = 1038
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2
Query: 389 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQLLVTQ 240
RTY H Y + RTY + + +A R + + P I W G + +TQ
Sbjct: 917 RTYAHVYRTYAQ-VYRTYAHVYRTYAHVYRTYARVPNICTWAGKRCNITQ 965
>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 386 TYVHHDTCYRRHPDRTYEYHHHGHA 312
TY H DT +HPD H HA
Sbjct: 323 TYTHQDTQMHKHPDTQMYVHAPRHA 347
>SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)
Length = 1206
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 248 QGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 349
QGAG +T ++W R+ R GTHR+G+
Sbjct: 948 QGAG-RTGRDAWNGTHGPGRMARDARDGTHRTGR 980
>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1957
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 226 SRQPYCVTRSWSPNQC*IMGYWTCC 300
+R P C +S S N C I G+++ C
Sbjct: 942 ARDPVCPAKSQSCNSCGIKGHFSAC 966
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,063,749
Number of Sequences: 59808
Number of extensions: 332385
Number of successful extensions: 1090
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -