Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060167.seq
(534 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 118 3e-27
U39854-2|AAA81077.2| 703|Caenorhabditis elegans Puf (pumilio/fb... 29 2.1
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z49969-2|CAA90270.1| 564|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr... 27 6.4
U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein. 27 6.4
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 118 bits (283), Expect = 3e-27
Identities = 52/59 (88%), Positives = 53/59 (89%)
Frame = +2
Query: 254 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVN 430
AG Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWHR VN
Sbjct: 57 AGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVN 115
Score = 52.0 bits (119), Expect = 3e-07
Identities = 26/52 (50%), Positives = 34/52 (65%)
Frame = +1
Query: 91 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 246
ARPLV+VY EK E Q + LP VF+ PIRPDLV+ + + +N RQ + V
Sbjct: 3 ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAV 53
Score = 37.1 bits (82), Expect = 0.008
Identities = 12/27 (44%), Positives = 24/27 (88%)
Frame = +1
Query: 451 LGGSVAATGVPALVQARGHILKKISEL 531
+ ++AA+G+PAL+QARGH++ +++E+
Sbjct: 123 VSSAIAASGIPALLQARGHVIDQVAEV 149
>U39854-2|AAA81077.2| 703|Caenorhabditis elegans Puf (pumilio/fbf)
domain-containingprotein 9 protein.
Length = 703
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 204 SRFYVQELEAALLRDKELVTKPVLNH 281
SRF Q+LE A LRDK + PVL +
Sbjct: 357 SRFIQQKLERASLRDKAAIFTPVLEN 382
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 377 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 294
HHD +++H + ++ HHHGH G H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145
>Z49969-2|CAA90270.1| 564|Caenorhabditis elegans Hypothetical
protein W01C9.2 protein.
Length = 564
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = +1
Query: 88 VARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVTRSWS 261
VA V S+K ++ G A P K + L+ D + + +R PY WS
Sbjct: 507 VALNSVKKISKKEKSTNGLAVVAPTAKKQTMLELLIGDFLMRVPPTARNPYLTEEQWS 564
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical protein
R08B4.1b protein.
Length = 1160
Score = 27.5 bits (58), Expect = 6.4
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 5/124 (4%)
Frame = -2
Query: 389 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQLLVTQ*GCLEFLDIE 210
R +++ + C + +P H G A F GD ++V G IE
Sbjct: 1023 RHFMYRNKCGKSYPQYIKMLPHDGEAIFASDLE--------VGDCVVVLYKGKYRQQKIE 1074
Query: 209 T*TSLTRSGRMGALNTNGRGLAAPCTVSLFSEYTDTKGRAT-----DRLISLL*RSYTSE 45
T T R+G L NGR + S +SE + T D+L S+L + +
Sbjct: 1075 TITRSVRTGIYSPLTNNGRIIVNDMLASCYSEIQQNTLQTTFFWAYDKLRSVL-VEFFGD 1133
Query: 44 IYTN 33
+Y N
Sbjct: 1134 LYNN 1137
>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical protein
R08B4.1a protein.
Length = 1137
Score = 27.5 bits (58), Expect = 6.4
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 5/124 (4%)
Frame = -2
Query: 389 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQLLVTQ*GCLEFLDIE 210
R +++ + C + +P H G A F GD ++V G IE
Sbjct: 1000 RHFMYRNKCGKSYPQYIKMLPHDGEAIFASDLE--------VGDCVVVLYKGKYRQQKIE 1051
Query: 209 T*TSLTRSGRMGALNTNGRGLAAPCTVSLFSEYTDTKGRAT-----DRLISLL*RSYTSE 45
T T R+G L NGR + S +SE + T D+L S+L + +
Sbjct: 1052 TITRSVRTGIYSPLTNNGRIIVNDMLASCYSEIQQNTLQTTFFWAYDKLRSVL-VEFFGD 1110
Query: 44 IYTN 33
+Y N
Sbjct: 1111 LYNN 1114
>U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein.
Length = 790
Score = 27.5 bits (58), Expect = 6.4
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 5/124 (4%)
Frame = -2
Query: 389 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQLLVTQ*GCLEFLDIE 210
R +++ + C + +P H G A F GD ++V G IE
Sbjct: 653 RHFMYRNKCGKSYPQYIKMLPHDGEAIFASDLE--------VGDCVVVLYKGKYRQQKIE 704
Query: 209 T*TSLTRSGRMGALNTNGRGLAAPCTVSLFSEYTDTKGRAT-----DRLISLL*RSYTSE 45
T T R+G L NGR + S +SE + T D+L S+L + +
Sbjct: 705 TITRSVRTGIYSPLTNNGRIIVNDMLASCYSEIQQNTLQTTFFWAYDKLRSVL-VEFFGD 763
Query: 44 IYTN 33
+Y N
Sbjct: 764 LYNN 767
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,562,825
Number of Sequences: 27780
Number of extensions: 236101
Number of successful extensions: 806
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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