Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060166.seq
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 164 9e-42
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 164 1e-41
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 164 1e-41
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 96 5e-21
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 91 1e-19
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 77 2e-15
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.007
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.007
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 35 0.013
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.017
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 34 0.022
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 33 0.029
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.20
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.27
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.47
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 27 1.9
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar... 27 2.5
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.3
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe... 26 4.4
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 26 4.4
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 26 4.4
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 5.8
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 26 5.8
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 5.8
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo... 26 5.8
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 25 7.7
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 7.7
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 164 bits (399), Expect = 9e-42
Identities = 86/140 (61%), Positives = 100/140 (71%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISK 129
Query: 438 NGQTREHALLAFTLGVKQLHRRSNKMDSTEPPYSEXQI*GNQEGSILIHQEDWLQPSCCR 617
+GQTREHALLA+TLGVKQL NKMD+T + + + + + ++ P
Sbjct: 130 DGQTREHALLAYTLGVKQLIVAVNKMDTTGWSQARFEEIVKETSNFI--KKVGFNPKTVP 187
Query: 618 FRGPFLDGTGDNMLXPSTKM 677
F P GDNM+ P+T M
Sbjct: 188 F-VPVSGFQGDNMIEPTTNM 206
Score = 140 bits (338), Expect = 2e-34
Identities = 63/68 (92%), Positives = 66/68 (97%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 164 bits (398), Expect = 1e-41
Identities = 85/140 (60%), Positives = 100/140 (71%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISK 129
Query: 438 NGQTREHALLAFTLGVKQLHRRSNKMDSTEPPYSEXQI*GNQEGSILIHQEDWLQPSCCR 617
+GQTREHALLA+TLGVKQL NKMD+T + + + + + ++ P
Sbjct: 130 DGQTREHALLAYTLGVKQLIVAVNKMDTTGWSQARFEEIVKETSNFI--KKVGFNPKTVP 187
Query: 618 FRGPFLDGTGDNMLXPSTKM 677
F P GDNM+ P+T M
Sbjct: 188 F-VPVSGFQGDNMIEPTTNM 206
Score = 140 bits (338), Expect = 2e-34
Identities = 63/68 (92%), Positives = 66/68 (97%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 164 bits (398), Expect = 1e-41
Identities = 85/140 (60%), Positives = 100/140 (71%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISK 129
Query: 438 NGQTREHALLAFTLGVKQLHRRSNKMDSTEPPYSEXQI*GNQEGSILIHQEDWLQPSCCR 617
+GQTREHALLA+TLGVKQL NKMD+T + + + + + ++ P
Sbjct: 130 DGQTREHALLAYTLGVKQLIVAVNKMDTTGWSQARFEEIVKETSNFI--KKVGFNPKTVP 187
Query: 618 FRGPFLDGTGDNMLXPSTKM 677
F P GDNM+ P+T M
Sbjct: 188 F-VPVSGFQGDNMIEPTTNM 206
Score = 140 bits (338), Expect = 2e-34
Identities = 63/68 (92%), Positives = 66/68 (97%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 95.9 bits (228), Expect = 5e-21
Identities = 45/95 (47%), Positives = 61/95 (64%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG +
Sbjct: 301 GKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFER 360
Query: 438 NGQTREHALLAFTLGVKQLHRRSNKMDSTEPPYSE 542
GQTREHA+LA T G+ L NKMD +SE
Sbjct: 361 GGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 395
Score = 79.4 bits (187), Expect = 4e-16
Identities = 34/64 (53%), Positives = 47/64 (73%)
Frame = +1
Query: 64 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 243
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 244 AERD 255
ER+
Sbjct: 296 EERE 299
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 91.1 bits (216), Expect = 1e-19
Identities = 44/87 (50%), Positives = 55/87 (63%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
G+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +
Sbjct: 240 GVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLE 299
Query: 438 NGQTREHALLAFTLGVKQLHRRSNKMD 518
NGQTREHA L LG+ ++ NK+D
Sbjct: 300 NGQTREHAYLLRALGISEIVVSVNKLD 326
Score = 72.5 bits (170), Expect = 5e-14
Identities = 31/63 (49%), Positives = 44/63 (69%)
Frame = +1
Query: 64 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 243
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 244 AER 252
ER
Sbjct: 235 EER 237
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 77.0 bits (181), Expect = 2e-15
Identities = 42/95 (44%), Positives = 57/95 (60%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 437
GITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 101 GITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP----- 155
Query: 438 NGQTREHALLAFTLGVKQLHRRSNKMDSTEPPYSE 542
QTREH LLA +GVKQ+ NK+D EP E
Sbjct: 156 --QTREHLLLARQVGVKQIVVYINKVDMVEPDMIE 188
Score = 35.1 bits (77), Expect = 0.010
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 144
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 303 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 398
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 303 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 398
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 34.7 bits (76), Expect = 0.013
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 258 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
GITI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 78 GITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
Score = 28.7 bits (61), Expect = 0.83
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCG 147
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.017
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +3
Query: 288 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 458
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
Score = 29.1 bits (62), Expect = 0.63
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGI 153
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.9 bits (74), Expect = 0.022
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 258 GITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
GIT I + F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 203 GITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 33.5 bits (73), Expect = 0.029
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +3
Query: 306 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 485
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 486 KQLHRRSNKMD 518
K + NK+D
Sbjct: 163 KHIIILQNKVD 173
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.20
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 279 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.27
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 303 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 413
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.47
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 315 IIDAPGHRDFIKNMITGTSQADCAVLIV 398
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 27.5 bits (58), Expect = 1.9
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Frame = +1
Query: 271 ILLSGSSKLASTMLP--SLMLLDTEISSRT*SQEPLRLIALCSS*LPVPVNSKLVSLRTV 444
ILL + L+S+ LP L+ + +++ P S+ S + S +
Sbjct: 237 ILLQLKNVLSSSALPYDQLLAIKNQLAQLEKPASPSTSSVATSAPSVPSALSSISSTPFM 296
Query: 445 KPVSMPCSLSPSVSNSFIVGVTKWIPLNHHTVXPRFEEIKKEVSSYIKKIGYNPAAV 615
KP S+P ++ P++ +++ V+ PL H V P + K +SS YN A+
Sbjct: 297 KP-SIPSTI-PTIPSAYSASVSSQPPLTHSYVHPGPQSHKYSLSSGPPASLYNANAL 351
>SPAC222.11 |hem13||coproporphyrinogen III oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 312
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = -3
Query: 563 LISSNLGLTVWWFSGIHFVTPTMKLFDTEGE 471
L++S+ G +WWF G +TP++ LF+ +G+
Sbjct: 126 LVNSD-GKKIWWFGGGADLTPSI-LFEEDGK 154
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 318 IDAPGHRDFIKNMITGTSQADCAVLIV 398
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 182
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 614 TAAGL*PIFLMYEDTSFLISSNLGLTVWWFSGIHFVTPTMKLFDTE 477
TAAG+ +FL FL+++ L + F I+ + T K DT+
Sbjct: 41 TAAGIYALFLFLNWGGFLLTNLLAFAMPAFFSINAIETTNKADDTQ 86
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.2 bits (55), Expect = 4.4
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 298 ASTMLPSLMLLDTEISSRT*SQEPLRLIALCSS*LPVPVNSKLVSLRTVKPVSMPCSLSP 477
+S L S+ + TE S+ T S + SS LPV + VS T P + SP
Sbjct: 213 SSETLTSVSITSTE-SAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSP 271
Query: 478 -SVSNSFIV 501
S S+S++V
Sbjct: 272 ASSSSSYLV 280
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 261 ITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 353
+ I+I + E +++ T+ID PG DFI N
Sbjct: 71 VEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 454 SMPCSLSPSVSNSFIVGVTKWIPLNHHTVXPRFEEIKKEVSSYI 585
S+PC SVS + + + I V + E++KE SYI
Sbjct: 1610 SLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVRKEAGSYI 1653
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -1
Query: 292 SNFQRAISIVIPSHAQPLVCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWW 113
SN +R ++ V +PK I I++ F P S S C+Y S D W
Sbjct: 13 SNLRRMNRDHSSNNTNRTVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWR 72
Query: 112 T 110
T
Sbjct: 73 T 73
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 649 SPVPSRNGPRKRQQLG 602
SP+PSR G RKR+ G
Sbjct: 207 SPIPSRRGRRKRKMRG 222
>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 553 EEIKKEVSSYIKKIGYNPAAVAFVAHFW 636
EE++K V Y KK G + + V FW
Sbjct: 162 EELEKRVEEYKKKFGEDESVPVPVPDFW 189
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 7.7
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -3
Query: 326 SINDGNIVLASFELPESNIDCDTKSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 147
S++ + L S+ P S T A ++YL+ PL S S S + +R SIP
Sbjct: 305 SVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIP 364
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.4 bits (53), Expect = 7.7
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = -3
Query: 389 HSAISLRGSCDHVLD--EISVSRSINDGNIVLASFELPESNID-CDTKSRSAFSLSNTQA 219
H ++ S ++D +S+ +SIN + SF +++ CD + S FS NT +
Sbjct: 249 HYVFAISSSSLQIIDINTLSLVKSINLKDDESFSFISRLTSVHFCDRQIFSKFSAVNTAS 308
Query: 218 YLKDPLPISWASFSNFSMVRLS 153
K I ASFS S + L+
Sbjct: 309 TSKTSDTIERASFSKPSFIFLT 330
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,034
Number of Sequences: 5004
Number of extensions: 60304
Number of successful extensions: 221
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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