Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060165.seq
         (460 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    32   0.003
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    32   0.003
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    30   0.012
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    30   0.012
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    29   0.016
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       26   0.19 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   1.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   2.4  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   3.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   4.2  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   7.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   9.6  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 31.9 bits (69), Expect = 0.003
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 237 ELDRQTLSWNAGXWGCSTWL-VXSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSW 410
           E +   L WN   +G    L +   +LW+PDV++ N+A     G +     V +NGS  +
Sbjct: 59  EWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLY 118

Query: 411 I 413
           +
Sbjct: 119 V 119


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 31.9 bits (69), Expect = 0.003
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 237 ELDRQTLSWNAGXWGCSTWL-VXSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSW 410
           E +   L WN   +G    L +   +LW+PDV++ N+A     G +     V +NGS  +
Sbjct: 59  EWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLY 118

Query: 411 I 413
           +
Sbjct: 119 V 119


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 29.9 bits (64), Expect = 0.012
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 231 SNELDRQTLSWNAGXWGCSTWL-VXSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSV 404
           S E +   L WN   +G    L +   +LW+PDV++ N+A     G +     V + GS 
Sbjct: 57  SLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSC 116

Query: 405 SWI 413
            ++
Sbjct: 117 LYV 119


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 29.9 bits (64), Expect = 0.012
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 231 SNELDRQTLSWNAGXWGCSTWL-VXSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSV 404
           S E +   L WN   +G    L +   +LW+PDV++ N+A     G +     V + GS 
Sbjct: 57  SLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSC 116

Query: 405 SWI 413
            ++
Sbjct: 117 LYV 119


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 29.5 bits (63), Expect = 0.016
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +3

Query: 237 ELDRQTLSWNAGXWGCSTWL-VXSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSW 410
           E +   L WN   +G    L +   +LW+PDV++ N+A     G +     V + GS  +
Sbjct: 59  EWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLY 118

Query: 411 I 413
           +
Sbjct: 119 V 119


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 25.8 bits (54), Expect = 0.19
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 285 CSPXPLRSNSAFVDPIHLKICQYPHGGLGLT 193
           CSP P R+N + VD I    C   +G  G T
Sbjct: 110 CSPNPCRNNGSCVDRIADFECNCKNGWKGKT 140


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 194 RMLTCLKCRVRLTTILESGGDSRS 123
           R+ TC++C      ILE  GD  S
Sbjct: 509 RLFTCMECPNNYPWILEPTGDGFS 532


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -2

Query: 285 CSPXPLRSNSAFVDPIHLKICQYPHGGLG 199
           C P P ++     D ++   C  P G LG
Sbjct: 226 CKPNPCQNGGTCHDLVNSFSCSCPSGTLG 254


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 194 RMLTCLKCRVRLTTILESGGDSRS 123
           R+ TC++C      IL+  GD  S
Sbjct: 502 RLFTCMECPNNYPWILDPTGDGFS 525


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 72   AFCRTSYSTSEEKR*QNNIS 13
            A C   YST EEK  Q N S
Sbjct: 1374 AVCDACYSTIEEKNLQVNES 1393


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 10/42 (23%), Positives = 16/42 (38%)
 Frame = +1

Query: 34  FLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVV 159
           F  TC I    +CE  +     +D ++    R      KI +
Sbjct: 188 FFYTCLIQIETQCEIVSDTLRNLDKIVTNGFRNVAESRKIFI 229


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 321 PDVVLLNAAATTAGDYALRARVSNNGSV 404
           PD++ + +  T  GD     +V  NG++
Sbjct: 53  PDIIWVRSDGTAVGDVPGLRQVLANGNL 80


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,044
Number of Sequences: 336
Number of extensions: 2025
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)