Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060165.seq
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    30   0.20 
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    25   5.6  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    25   5.6  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    25   7.3  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    24   9.7  

>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 122 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNRII 18
           Y    ES + D+ +  SH+ A +I Q  R+G R++
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKRLL 97


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 321 ASTSVPXTPAKCCSPXPLRSNSAF-VDPIHLKICQ 220
           ASTS+P TP+K      + S+ A  VD + +KI Q
Sbjct: 3   ASTSIPETPSKLPDALLVNSDPASKVDNVSVKIEQ 37


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/30 (30%), Positives = 11/30 (36%)
 Frame = +3

Query: 222 GRSSNELDRQTLSWNAGXWGCSTWLVXSER 311
           GR        T  W  G W   +W + S R
Sbjct: 292 GRQITRFGTLTARWKTGVWSLGSWGIASPR 321


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 25  LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVN 162
           L+     C I     C  A  L  + DSL+  Y+  SP   K V+N
Sbjct: 371 LISIFKRCEIMLPKTCTVAHLLDKLFDSLVLKYNTSSP---KFVIN 413


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 354 TAGDYALRARVSNNGSVSWIKRLDISTPXSMQLDN 458
           +A DYA R      G+  W+KR D++   S +++N
Sbjct: 350 SALDYAKRLTEYCGGAHIWLKREDLNHGGSHKINN 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,806,635
Number of Sequences: 5004
Number of extensions: 33911
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)