Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060165.seq
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0017 + 132109-132924                                             31   0.59 
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    29   1.4  
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039...    27   5.5  
11_01_0521 + 4083594-4083763,4083765-4083963,4084059-4084244,408...    27   7.3  
03_02_0488 - 8824980-8825267,8825364-8827775                           27   7.3  
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892     27   7.3  
09_04_0028 - 13928542-13929538,13929736-13929818                       27   9.6  
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    27   9.6  

>08_01_0017 + 132109-132924
          Length = 271

 Score = 30.7 bits (66), Expect = 0.59
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -3

Query: 227 SASIRTVDSDSRMLTCLKCRVRLTTILESGGDSRSYVARSESIMRDSDVAFSHSAALAIA 48
           SA       DS   TC  CR R  +   +  D+ +   RS+ +  D D + + +A L + 
Sbjct: 86  SAGFSFASRDSHSSTCSCCRSRTASDASASADAVTRALRSDRLFFDPDASPAAAADLKLN 145

Query: 47  QVRRN 33
           + + N
Sbjct: 146 KAKAN 150


>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 213 HGGLGLTNVNMSQMQGQVDYDFGVGGRLPI 124
           +GG  L    ++Q  G   Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129


>02_05_1184 +
           34802749-34802892,34802981-34803220,34803636-34803950,
           34804030-34804209,34804312-34804504,34805062-34805324,
           34805461-34805590,34805719-34805786,34805951-34806199,
           34806284-34806357,34808052-34808143,34808603-34808685,
           34810337-34810408,34810558-34810683,34810996-34811037
          Length = 756

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 143 SGGDSRSYVARSESIMRDSDVAFSHSAALAIAQVRRNGNRI 21
           S GD +      + I + SDV  SHSA +    V  NG  +
Sbjct: 339 SFGDRQEIKLHRQGIYKASDVTLSHSAQIGANSVVGNGTSV 379


>11_01_0521 +
           4083594-4083763,4083765-4083963,4084059-4084244,
           4085834-4086025,4086979-4087200,4089238-4089444,
           4089681-4090082,4090201-4090230,4090307-4090318
          Length = 539

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = +1

Query: 52  IASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHVNIRESESTVRILADL 231
           +  +AE +NA+ L  M DS++  ++R    +  +  N+T H + V   +++    ++   
Sbjct: 342 VLESAERQNASRLVKMEDSIIHQHERIIGVEQDMSANITQHGQQVQTLQNKENDVLMKSF 401

Query: 232 Q 234
           Q
Sbjct: 402 Q 402


>03_02_0488 - 8824980-8825267,8825364-8827775
          Length = 899

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -2

Query: 369 RSP-RRWLQPRLAVPRQASTSVPXTPA---KCCSPXPLRSNS 256
           RSP RR L P L  PRQ+STS P  P+   KC  P  +   S
Sbjct: 461 RSPLRRMLDPILK-PRQSSTSGPIQPSFVPKCHLPGHIDKQS 501


>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
          Length = 291

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +3

Query: 282 CSTWLVXSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPXSMQLDN 458
           CS++L    R+W     +++   +      LRA   +N S +    +D+STP +  LDN
Sbjct: 137 CSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT--LDN 190


>09_04_0028 - 13928542-13929538,13929736-13929818
          Length = 359

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 277 GAAALGWCXRNACGGLTWYC*TR 345
           G AALGW  R+A G L+ +  TR
Sbjct: 5   GTAALGWAARDASGHLSPFSFTR 27


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 85  SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHVNIRESESTVRILADLQMN 240
           +L   +D L+  YD+  PPDS+ V        H       + +R+L  + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,482,398
Number of Sequences: 37544
Number of extensions: 300169
Number of successful extensions: 915
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)