Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060165.seq
(460 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 36 0.012
SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24) 35 0.028
SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 33 0.086
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) 33 0.15
SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 32 0.26
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 31 0.61
SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35) 30 0.80
SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24) 30 0.80
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0) 29 2.4
SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24) 29 2.4
SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08) 29 2.4
SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0) 28 4.3
SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 28 4.3
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3) 27 5.6
SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_35938| Best HMM Match : BTB (HMM E-Value=8.5e-24) 27 7.5
SB_53336| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.022) 27 7.5
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06) 27 9.9
>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 716
Score = 36.3 bits (80), Expect = 0.012
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Frame = +3
Query: 255 LSWNAGXWG-CSTWLVXSERLWRPDVVLLNAAATTAGD--YALRA--RVSNNGSVSWIKR 419
LSWNA +G S + ++LW+PD+ L N A ++A Y +A +VS+ G W+
Sbjct: 124 LSWNASEYGGISQVNLEPDQLWKPDIYLYNNADSSADGSLYGFKAKIKVSHTGLNMWLAP 183
Query: 420 LDIST 434
++T
Sbjct: 184 TILTT 188
>SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24)
Length = 478
Score = 35.1 bits (77), Expect = 0.028
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +3
Query: 252 TLSWNAGXWG-CSTWLVXSERLWRPDVVLLNAA 347
+LSWNA +G +T V +RLW PD+VL N A
Sbjct: 83 SLSWNASEFGGVNTLHVEPDRLWVPDIVLYNNA 115
>SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 541
Score = 33.5 bits (73), Expect = 0.086
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Frame = +3
Query: 255 LSWNAGXWG-CSTWLVXSERLWRPDVVLLNAAATTAGDYALRARVSNN------GSVSWI 413
L WN +G + + +R+W+PDV+L N A+T +L ++ N GS +W+
Sbjct: 93 LKWNPDDFGGIKSINIAPDRVWKPDVLLYNRASTDLRFGSLNNKIDTNVIVNHDGSTTWL 152
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 255 LSWNAGXW-GCSTWLVXSERLWRPDVVLLN 341
L WN + G + ++ +++W+PDV+L N
Sbjct: 511 LQWNPDDFSGIKSIIIAPDKVWKPDVLLFN 540
>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
Length = 342
Score = 32.7 bits (71), Expect = 0.15
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +3
Query: 255 LSWNAGXWG-CSTWLVXSERLWRPDVVLLNAAATTAG--DYALRARVSNNGSVSWIKRLD 425
L+WN +G + S+ +W PD+ +LN+A + +R +++ G V W+ L
Sbjct: 52 LAWNETEYGGIKQMTLRSKLIWTPDISVLNSANKDMDLREKNIRLFINSAGEVLWMNPLI 111
Query: 426 ISTPXSMQL 452
+ T M +
Sbjct: 112 LHTSCGMDI 120
>SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 422
Score = 31.9 bits (69), Expect = 0.26
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Frame = +3
Query: 255 LSWNAGXWG-CSTWLVXSERLWRPDVVLLNAAATTAGDYALRARV------SNNGSVSWI 413
L+WN +G + V +W+PD++L N A+T +L ++ S++GS +W+
Sbjct: 35 LNWNPEDFGGVKSINVEPNNVWKPDILLYNPASTDLRVESLYKKIDTKVILSSDGSAAWL 94
Query: 414 KRLDIST 434
I T
Sbjct: 95 SPAIIKT 101
>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 31.1 bits (67), Expect = 0.46
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +3
Query: 255 LSWNAGXWGCSTWLVXSER--LWRPDVVLLNAAATTAGDYALR----ARVSNNGSVSWIK 416
L W+ +G +V ER +W PDVVLLN A ++ + V +NG V W+
Sbjct: 48 LQWDQSKYGGIKEVVLPERGVIWVPDVVLLNNAEKSSMGKPVNEGNPVLVESNGVVRWLA 107
Query: 417 RLDISTPXSMQL 452
+ + + M +
Sbjct: 108 PVVLKSRCKMDV 119
>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 506
Score = 30.7 bits (66), Expect = 0.61
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +3
Query: 243 DRQTLSWNAGXW-GCSTWLVXSERLWRPDVVLLNAAATTAG----DYALRARVSNNGSVS 407
D + L+W+ + G T + ++ +W PD+VL ++A + Y +S +GS +
Sbjct: 50 DNELLTWHPSNYEGVQTVRLDAKSVWIPDIVLYDSADSVFSGGHEKYKTHVIISKDGSSA 109
Query: 408 W 410
W
Sbjct: 110 W 110
>SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35)
Length = 479
Score = 30.3 bits (65), Expect = 0.80
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +3
Query: 255 LSWNAGXWGCSTWLVXSE-RLWRPDVVLL-NAAATTAG---DYALRARVSNNGSVSWIKR 419
L WN +G + S ++W PD+VL NA A+T G ++ R VS++G W+
Sbjct: 45 LRWNETFYGGIKEINVSPLQVWTPDLVLYNNADASTDGSLENFKTRIIVSSDGKNMWLAP 104
Query: 420 LDISTPXSMQL 452
+ S+ ++++
Sbjct: 105 VIFSSSCTIKI 115
>SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)
Length = 445
Score = 30.3 bits (65), Expect = 0.80
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 255 LSWNAGXWG-CSTWLVXSERLWRPDVVLLNA 344
LSWNA +G S V +R W PD++L N+
Sbjct: 30 LSWNASEYGGVSQIYVSPKRPWTPDILLYNS 60
>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1293
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 273 PLRSNSAFVDPIHLKICQYPHGGLGLTNVNMSQMQGQVDYD 151
PL+ NS F P HL + Q + LTN ++ G +D+D
Sbjct: 343 PLKVNSRFAFP-HLTVKQKHSPSIHLTNATKNESNGLLDHD 382
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +3
Query: 255 LSWNAGXWGCSTWL-VXSERLWRPDVVLLN--AAATTAGDYAL--RARVSNNGSVSWIKR 419
L+W+ +G T + V +W+PD+VL + T Y RA + +NG W
Sbjct: 73 LTWDPKMYGGLTSINVNPNMIWKPDIVLYHNIGFGETGAIYKFDTRATIMHNGYTEWFAP 132
Query: 420 LDI 428
+I
Sbjct: 133 TEI 135
>SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 198 VRVHRADTGRSSNELDRQTLSWNAGXW--GCSTWLVXSERLWRP 323
++V+ GR ++++++ W+A W GC W V + L RP
Sbjct: 46 LQVYDPPEGRKYSKMNKKLQKWSADVWGLGCLIWEVFNGTLPRP 89
>SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0)
Length = 360
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 288 TWLVXSERLWRPDVVLLNAAATTAGDYAL-RARVSNNG 398
TWL+ +WRPD+VL +A D L R ++++NG
Sbjct: 272 TWLLD---MWRPDIVLYDAGVDPHVDDVLGRLKLTDNG 306
>SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)
Length = 373
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 255 LSWNAGXW-GCSTWLVXSERLWRPDVVLLNAA 347
L WN + G ++ + RLW PD+ L N A
Sbjct: 74 LRWNVSAYDGVDNIVIKASRLWLPDITLYNNA 105
>SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08)
Length = 362
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +3
Query: 255 LSWNAGXWG-CSTWLVXSERLWRPDVVLLNAAATT---AGDYALRARVSNNGSVSW 410
L WN +G +++ S +LW PD+ L N A + V+++GS+ W
Sbjct: 285 LRWNHTKYGGIKSFVTPSRQLWLPDITLYNNANDNYEKEKEEYYGLTVNSDGSIGW 340
>SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 234 NELDRQTLSWNAGXWGCSTWLVXSERLWRPDVVLLNAAATTAGDYALRARVSN 392
N+L + + G G T+ V + + +V + N AAT G L VSN
Sbjct: 279 NDLPMAVMGSSGGYSGLKTYGVLDKMTLKTEVKIKNDAATAGGCSVLEVNVSN 331
>SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
Length = 563
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 449 LHRXWSANVQALYPG-DGPVIRYTGAXSVVPGG 354
L R W +A + G DGPV+ Y G SV+ GG
Sbjct: 134 LQRYWMN--RAFWKGPDGPVLLYVGGESVLSGG 164
>SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 548
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = +3
Query: 255 LSWNAGXWG-CSTWLVXSERLWRPDVVLL-NAAATTAG---DYALRARVSNNGSVSW 410
L+WN +G + + ++W PD++L NA T AG Y S++G+ W
Sbjct: 134 LAWNTSKYGGIESVNLNPAKVWIPDIILYNNADETYAGGLEKYKTSVIASSDGTQEW 190
>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -2
Query: 198 LTNVNMSQMQGQVDYDFGVGGRLPIVRCEERVDHE 94
L++++ +G VD FGV + +R +++D+E
Sbjct: 594 LSHISGGDKEGDVDLHFGVNSQTGAIRLNKKLDYE 628
>SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3)
Length = 79
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 255 LSWNAGXWGCSTWLVXSER--LWRPDVVLLN 341
L W+ +G +V ER +W PDVVLLN
Sbjct: 48 LQWDQSKYGGIKEVVLPERGVIWVPDVVLLN 78
>SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 306 ERLWRPDVVLLNAAATTAG--DYAL---RARVSNNGSVSWIKRLDISTPXSMQLDN 458
+++W+PD L N AG D +L RV NG+V++ R+ + M+ N
Sbjct: 135 DKIWKPDTYLENVKKIDAGSDDKSLVHKGFRVYPNGNVTFSTRISATLSCKMEFRN 190
>SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 255 LSWNAGXWGCSTWL-VXSERLWRPDVVLLNAA 347
L+W+ +G T + V R+WRPD++L N A
Sbjct: 84 LTWDPTHFGNLTSINVDPLRVWRPDLILYNNA 115
>SB_35938| Best HMM Match : BTB (HMM E-Value=8.5e-24)
Length = 467
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -2
Query: 249 VDPIHLKICQYPHGGLGLTNVNMSQMQGQVDYDFGVGGRLPIV 121
+D I LK+ + GL+ + +QG V YDFG+ LP+V
Sbjct: 368 LDEIALKLPEPVRVTPGLSYCVKAHIQGPVKYDFGITA-LPVV 409
>SB_53336| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.022)
Length = 91
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/51 (21%), Positives = 24/51 (47%)
Frame = +3
Query: 306 ERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPXSMQLDN 458
+++W+PD + N ++T + + G V + +R+ + M L N
Sbjct: 26 KQIWKPDTYINNEKSSTVPENQFLLTIDPEGRVVYSQRMTVVASCMMYLRN 76
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 26.6 bits (56), Expect = 9.9
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -3
Query: 194 RMLTCLKCRVRLTTILES---GGDSRSYVARSESIMRDSDVAFSHSAALAIAQVRRN 33
R T KC + L LE G Y+ ++ +D D A AA +A +RRN
Sbjct: 180 RESTSAKCLLHLLDRLEECLKQGHLPQYMMPESNLFKDEDPARLAEAASVVADLRRN 236
>SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06)
Length = 229
Score = 26.6 bits (56), Expect = 9.9
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 76 NATSLSLMIDSLLATYDRESPPD-SKIVVNLTLHLRHVNIRE-SESTVRILAD--LQMNW 243
NA +LS+ I+ LA+YDR+ P+ + V + + + ++ E E+ + D L+ W
Sbjct: 15 NAHNLSVFINDALASYDRKVRPNYGGLPVMVLIEFKVISFGEIQEANMEYSFDIFLRQWW 74
Query: 244 IDKR 255
D R
Sbjct: 75 YDPR 78
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,592,916
Number of Sequences: 59808
Number of extensions: 299709
Number of successful extensions: 803
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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