Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060165.seq
(460 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic acety... 37 0.006
U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical pr... 37 0.006
U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine r... 37 0.006
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 35 0.033
Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical pr... 32 0.17
AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic ace... 32 0.17
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 32 0.17
AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinate... 32 0.17
Z81071-1|CAB03014.2| 510|Caenorhabditis elegans Hypothetical pr... 31 0.40
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 31 0.40
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 31 0.40
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 31 0.40
AY523513-1|AAR98635.1| 510|Caenorhabditis elegans acetylcholine... 31 0.40
U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine r... 31 0.53
U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine r... 31 0.53
U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine r... 31 0.53
AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine... 31 0.53
AC084197-42|AAU87806.2| 544|Caenorhabditis elegans Acetylcholin... 30 0.70
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 30 0.93
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 30 0.93
AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical ... 30 0.93
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z68118-7|CAA92184.2| 573|Caenorhabditis elegans Hypothetical pr... 29 1.2
L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte upt... 29 1.2
AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein. 29 1.2
AL110490-4|CAB54450.1| 474|Caenorhabditis elegans Hypothetical ... 29 1.2
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 29 1.2
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 29 1.2
AF187013-1|AAG35183.1| 573|Caenorhabditis elegans nicotinic ace... 29 1.2
Z50029-2|CAA90341.3| 537|Caenorhabditis elegans Hypothetical pr... 29 1.6
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 29 1.6
U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine re... 29 1.6
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 29 1.6
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 29 1.6
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 29 1.6
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 29 2.1
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 29 2.1
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 29 2.1
U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine r... 29 2.1
Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical pr... 27 6.6
X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit ... 27 6.6
U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha nicot... 27 6.6
AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine... 27 6.6
Z78546-2|CAB01770.1| 176|Caenorhabditis elegans Hypothetical pr... 27 8.7
Y08637-1|CAA69927.1| 487|Caenorhabditis elegans nicotinic acety... 27 8.7
U23525-2|AAK71378.1| 487|Caenorhabditis elegans Acetylcholine r... 27 8.7
AC006808-1|AAF60813.1| 486|Caenorhabditis elegans Hypothetical ... 27 8.7
>X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 575
Score = 37.1 bits (82), Expect = 0.006
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 255 LSWNAGXWG-CSTWLVXSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSWI 413
L+WN +G S V S+R+W PD+VL NA + V ++G V+W+
Sbjct: 122 LAWNPAEYGNISNLHVPSDRVWLPDIVLFNNADGNYEVSFKSNVFVDHHGDVTWV 176
>U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical
protein F18G5.4 protein.
Length = 615
Score = 37.1 bits (82), Expect = 0.006
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +3
Query: 255 LSWNAGXWG-CSTWLVXSERLWRPDVVLLNAAATT--AGDYALRARVSNNGSVSWI 413
LSWN W + R+W+PD++L+N A A + V+++G+V+W+
Sbjct: 174 LSWNESLWSEIKAIYIPHARIWKPDIILVNNAIREYYASLVSTDVMVTSDGNVTWL 229
>U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine
receptor protein 2 protein.
Length = 575
Score = 37.1 bits (82), Expect = 0.006
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 255 LSWNAGXWG-CSTWLVXSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSWI 413
L+WN +G S V S+R+W PD+VL NA + V ++G V+W+
Sbjct: 122 LAWNPAEYGNISNLHVPSDRVWLPDIVLFNNADGNYEVSFKSNVFVDHHGDVTWV 176
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 34.7 bits (76), Expect = 0.033
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 255 LSWNAGXWGCSTWL-VXSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 410
L+WN WG ++ + S+++W PD+VL NA A++ ++G V W
Sbjct: 90 LTWNPTDWGGVEYIHIPSDQIWIPDIVLYNNADGEPHITITSLAKIDHHGRVVW 143
>Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical
protein T05C12.2 protein.
Length = 500
Score = 32.3 bits (70), Expect = 0.17
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 303 SERLWRPDVVLLNAAATT-AGDYALRARVSNNGSV 404
S +LWRPDV+L N+ + + Y+ R VS+NG V
Sbjct: 104 SFKLWRPDVLLFNSVSESFDSTYSSRFIVSSNGDV 138
>AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 502
Score = 32.3 bits (70), Expect = 0.17
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +3
Query: 255 LSWNAGXWG-CSTWLVXSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 410
L W+ +G V S+ +W PDVVL N A G+Y + +A+++ NG+V W
Sbjct: 88 LRWDPVEYGGVEVLYVPSDTIWLPDVVLYNNA---DGNYQVTIMTKAKLTYNGTVEW 141
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 32.3 bits (70), Expect = 0.17
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 255 LSWNAGXWGCSTWL-VXSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 410
LSWN +G T + E LW PD++L NA + + VS G V+W
Sbjct: 67 LSWNPDEFGNITLMHFPGEMLWLPDIILYNNAHGSPWVSETTQVHVSFEGRVTW 120
>AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinated
protein 63 protein.
Length = 502
Score = 32.3 bits (70), Expect = 0.17
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +3
Query: 255 LSWNAGXWG-CSTWLVXSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 410
L W+ +G V S+ +W PDVVL N A G+Y + +A+++ NG+V W
Sbjct: 88 LRWDPVEYGGVEVLYVPSDTIWLPDVVLYNNA---DGNYQVTIMTKAKLTYNGTVEW 141
>Z81071-1|CAB03014.2| 510|Caenorhabditis elegans Hypothetical
protein F28F8.1 protein.
Length = 510
Score = 31.1 bits (67), Expect = 0.40
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +3
Query: 249 QTLSWNAGXWG-CSTWLVXSERLWRPDVVLLNAAATTA--GDYALRARVSNNGSVSWIKR 419
+TL+W+ +G S V + ++W+PDV++ N A + A V N G V +
Sbjct: 89 ETLTWDPKKFGNLSRIHVPAHKIWKPDVLVYNNANMNVEENEMETNAIVDNTGRVMLFRS 148
Query: 420 L--DISTPXSMQ 449
+ DIS ++Q
Sbjct: 149 MITDISCNLNLQ 160
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 31.1 bits (67), Expect = 0.40
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 240 LDRQTLSWNAGXWG-CSTWLVXSERLWRPDVVLLNAAATTAG-DYALRARVSNNGSVSW 410
+DR+ LSW+ +G + V E +W PD+VL N A + + +A + G V+W
Sbjct: 84 IDRK-LSWDPVNYGGVNVLYVPYEMIWVPDIVLYNNADSNYNITISTKATLHYTGEVTW 141
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 31.1 bits (67), Expect = 0.40
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 240 LDRQTLSWNAGXWG-CSTWLVXSERLWRPDVVLLNAAATTAG-DYALRARVSNNGSVSW 410
+DR+ LSW+ +G + V E +W PD+VL N A + + +A + G V+W
Sbjct: 84 IDRK-LSWDPVNYGGVNVLYVPYEMIWVPDIVLYNNADSNYNITISTKATLHYTGEVTW 141
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 31.1 bits (67), Expect = 0.40
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 240 LDRQTLSWNAGXWG-CSTWLVXSERLWRPDVVLLNAAATTAG-DYALRARVSNNGSVSW 410
+DR+ LSW+ +G + V E +W PD+VL N A + + +A + G V+W
Sbjct: 84 IDRK-LSWDPVNYGGVNVLYVPYEMIWVPDIVLYNNADSNYNITISTKATLHYTGEVTW 141
>AY523513-1|AAR98635.1| 510|Caenorhabditis elegans acetylcholine
receptor, one ofnine alpha a7-like nicotinic
acetylcholine receptor subunits(58.6 kD) (acr-18)
protein.
Length = 510
Score = 31.1 bits (67), Expect = 0.40
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +3
Query: 249 QTLSWNAGXWG-CSTWLVXSERLWRPDVVLLNAAATTA--GDYALRARVSNNGSVSWIKR 419
+TL+W+ +G S V + ++W+PDV++ N A + A V N G V +
Sbjct: 89 ETLTWDPKKFGNLSRIHVPAHKIWKPDVLVYNNANMNVEENEMETNAIVDNTGRVMLFRS 148
Query: 420 L--DISTPXSMQ 449
+ DIS ++Q
Sbjct: 149 MITDISCNLNLQ 160
>U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform a protein.
Length = 446
Score = 30.7 bits (66), Expect = 0.53
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 255 LSWNAGXWGCSTWL-VXSERLWRPDVVLLNAAATTAGDYALR--ARVSNNGSVSWIKRLD 425
L+WN +G L V SE +W+PD+++ N A + ++ ++ + G +S + +
Sbjct: 86 LTWNPSDFGNIKSLHVPSEMIWKPDLLVYNNANMNIKENEMQTNVQIEHTGKISLFRAII 145
Query: 426 ISTPXSMQLD 455
+Q++
Sbjct: 146 TDITCDLQME 155
>U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform b protein.
Length = 515
Score = 30.7 bits (66), Expect = 0.53
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 255 LSWNAGXWGCSTWL-VXSERLWRPDVVLLNAAATTAGDYALR--ARVSNNGSVSWIKRLD 425
L+WN +G L V SE +W+PD+++ N A + ++ ++ + G +S + +
Sbjct: 86 LTWNPSDFGNIKSLHVPSEMIWKPDLLVYNNANMNIKENEMQTNVQIEHTGKISLFRAII 145
Query: 426 ISTPXSMQLD 455
+Q++
Sbjct: 146 TDITCDLQME 155
>U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine
receptor protein 10 protein.
Length = 510
Score = 30.7 bits (66), Expect = 0.53
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 309 RLWRPDVVLLNAAATT-AGDYALRARVSNNGSVSWI 413
++WRPD++L N+A+ + V N G V+WI
Sbjct: 48 QIWRPDILLYNSASEDFDSSFKSNEVVYNTGEVNWI 83
>AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine
receptor, nicotinic,alpha 9 like (58.1 kD) alternative
variant a protein.
Length = 499
Score = 30.7 bits (66), Expect = 0.53
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 255 LSWNAGXWGCSTWL-VXSERLWRPDVVLLNAAATTAGDYALR--ARVSNNGSVSWIKRLD 425
L+WN +G L V SE +W+PD+++ N A + ++ ++ + G +S + +
Sbjct: 70 LTWNPSDFGNIKSLHVPSEMIWKPDLLVYNNANMNIKENEMQTNVQIEHTGKISLFRAII 129
Query: 426 ISTPXSMQLD 455
+Q++
Sbjct: 130 TDITCDLQME 139
>AC084197-42|AAU87806.2| 544|Caenorhabditis elegans Acetylcholine
receptor protein 25 protein.
Length = 544
Score = 30.3 bits (65), Expect = 0.70
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 252 TLSWNAGXWGCSTWLVXSE-RLWRPDVVLLNAAATTAGD-YALRARVSNNGSVSWI 413
+L W +G T L + +LW PDV++ N+A YA V NG V+W+
Sbjct: 86 SLKWKPEDYGGVTDLRFRKGQLWTPDVLMYNSADPQFDSRYASNLLVYPNGLVNWM 141
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 29.9 bits (64), Expect = 0.93
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +3
Query: 255 LSWNAGXW-GCSTWLVXSERLWRPDVVLLNAAATT--AGDYALRARVSNNGSVSWIKRLD 425
L+W+ W G ++ ++W PD + N T ++ R R V + K +D
Sbjct: 97 LTWDPKEWNGIERIIIPKSQIWIPDGYIFNTVEETEPLENHNARVRYDGRVEVDFNKLVD 156
Query: 426 ISTPXSM 446
++ P S+
Sbjct: 157 LTCPMSV 163
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 29.9 bits (64), Expect = 0.93
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +3
Query: 255 LSWNAGXW-GCSTWLVXSERLWRPDVVLLNAAATT--AGDYALRARVSNNGSVSWIKRLD 425
L+W+ W G ++ ++W PD + N T ++ R R V + K +D
Sbjct: 97 LTWDPKEWNGIERIIIPKSQIWIPDGYIFNTVEETEPLENHNARVRYDGRVEVDFNKLVD 156
Query: 426 ISTPXSM 446
++ P S+
Sbjct: 157 LTCPMSV 163
>AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical
protein F15E6.2 protein.
Length = 445
Score = 29.9 bits (64), Expect = 0.93
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +3
Query: 255 LSWNAGXWGCSTWLVXSERLWRPDVVLLNAAATT-AGDYALRARVSN-NGSVSWIKRLDI 428
+SW+ WG S ++W P++V +N +T+ G + +N G +
Sbjct: 120 VSWDKEQWGLSWLNFYWIQIWTPNIVQINGGSTSNPGQVTSKVLAANYTGQIYLWSDFSF 179
Query: 429 STPXSMQLDN 458
+TP Q ++
Sbjct: 180 TTPFRFQYED 189
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +3
Query: 252 TLSWNAGXWG--CSTWLVXSERLWRPDVVLLNAAATTAGDYALR--ARVSNNGSV 404
+L+W+ +G TW + +++W PD+++ N A A+R AR+ NG++
Sbjct: 123 SLTWDPALFGGITKTW-IPLDKIWVPDIIVFNMLAHEDLLSAVRAPARIHYNGTI 176
>Z68118-7|CAA92184.2| 573|Caenorhabditis elegans Hypothetical
protein R01E6.4 protein.
Length = 573
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 255 LSWNAGXWG-CSTWLVXSERLWRPDVVLLNAAATTAGDYALR-ARVSNNGSVSW 410
L+W +G T + S+ +W PD+VL N AA L A V+ G+V W
Sbjct: 99 LTWTPEKYGGLKTLHIPSDFIWTPDLVLYNNAAGDPDITILTDALVTFEGNVYW 152
>L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte uptake
defective protein4 protein.
Length = 433
Score = 29.5 bits (63), Expect = 1.2
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 154 VVNLTLHLRHVNIRESESTVRILADLQMNWIDK 252
+V++ H+ HV+I + E T+ + + M W D+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDE 106
>AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein.
Length = 433
Score = 29.5 bits (63), Expect = 1.2
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 154 VVNLTLHLRHVNIRESESTVRILADLQMNWIDK 252
+V++ H+ HV+I + E T+ + + M W D+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDE 106
>AL110490-4|CAB54450.1| 474|Caenorhabditis elegans Hypothetical
protein Y48B6A.4 protein.
Length = 474
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 255 LSWNAGXWGCSTWL-VXSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSV 404
L W+ +G T L + LW+PD++L N+A + + VS+NG V
Sbjct: 86 LRWSPEEYGNITTLQIPHGTLWKPDILLFNSANEHFDASFPVHMVVSSNGDV 137
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +3
Query: 252 TLSWNAGXWG--CSTWLVXSERLWRPDVVLLNAAATTAGDYALR--ARVSNNGSV 404
+L+W+ +G TW + +++W PD+++ N A A+R AR+ NG++
Sbjct: 123 SLTWDPALFGGITKTW-IPLDKIWVPDIIVFNMLAHEDLLSAVRAPARIHYNGTI 176
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +3
Query: 252 TLSWNAGXWG--CSTWLVXSERLWRPDVVLLNAAATTAGDYALR--ARVSNNGSV 404
+L+W+ +G TW + +++W PD+++ N A A+R AR+ NG++
Sbjct: 123 SLTWDPALFGGITKTW-IPLDKIWVPDIIVFNMLAHEDLLSAVRAPARIHYNGTI 176
>AF187013-1|AAG35183.1| 573|Caenorhabditis elegans nicotinic
acetylcholine receptor-like subunit ACR-12 protein.
Length = 573
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 255 LSWNAGXWG-CSTWLVXSERLWRPDVVLLNAAATTAGDYALR-ARVSNNGSVSW 410
L+W +G T + S+ +W PD+VL N AA L A V+ G+V W
Sbjct: 99 LTWTPEKYGGLKTLHIPSDFIWTPDLVLYNNAAGDPDITILTDALVTFEGNVYW 152
>Z50029-2|CAA90341.3| 537|Caenorhabditis elegans Hypothetical
protein ZC504.2 protein.
Length = 537
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 255 LSWNAGXWGCSTWL-VXSERLWRPDVVLLNAA 347
L W+ G WG L V +++W PD++L N A
Sbjct: 86 LMWDPGRWGKIRKLHVPVDQIWIPDILLYNNA 117
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 255 LSWNAGXWGCSTWL-VXSERLWRPDVVLLNAAATT-AGDYALRARVSNNGSVSWI 413
L W+ +G T + + ++W+PDV+L N+ T Y V + G V W+
Sbjct: 84 LVWDKAEYGNITDVRFPAGKIWKPDVLLYNSVDTNFDSTYQTNMIVYSTGLVHWV 138
>U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine
receptor family (seegbr) protein 3 protein.
Length = 438
Score = 29.1 bits (62), Expect = 1.6
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +3
Query: 303 SERLWRPDVVLLNAAATTAGDYA---LRARVSNNGSVSWIK-RLDISTPXSMQL 452
SERLW P+V +N+ +T + + NG+V W+ R+ +S P S +L
Sbjct: 112 SERLWTPNVCFVNSKSTQVHKSPASNILLIIYPNGTV-WLNYRVQVSAPCSFEL 164
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 255 LSWNAGXWGCSTWL-VXSERLWRPDVVLLNAAATT-AGDYALRARVSNNGSVSWI 413
L W+ +G T + + ++W+PDV+L N+ T Y V + G V W+
Sbjct: 84 LVWDKAEYGNITDVRFPAGKIWKPDVLLYNSVDTNFDSTYQTNMIVYSTGLVHWV 138
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 255 LSWNAGXWGCSTWL-VXSERLWRPDVVLLNAAATT-AGDYALRARVSNNGSVSWI 413
L W+ +G T + + ++W+PDV+L N+ T Y V + G V W+
Sbjct: 84 LVWDKAEYGNITDVRFPAGKIWKPDVLLYNSVDTNFDSTYQTNMIVYSTGLVHWV 138
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 255 LSWNAGXWGCSTWL-VXSERLWRPDVVLLNAAATT-AGDYALRARVSNNGSVSWI 413
L W+ +G T + + ++W+PDV+L N+ T Y V + G V W+
Sbjct: 84 LVWDKAEYGNITDVRFPAGKIWKPDVLLYNSVDTNFDSTYQTNMIVYSTGLVHWV 138
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 255 LSWNAGXWGCSTWL-VXSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSWI 413
L W+ + T + V E++W PD+VL NA + + + G+V W+
Sbjct: 100 LKWDPRDYANITQIRVAPEKVWLPDIVLFNNADGNYEVSFMCNVLILSTGTVLWV 154
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 255 LSWNAGXWGCSTWL-VXSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSWI 413
L W+ + T + V E++W PD+VL NA + + + G+V W+
Sbjct: 100 LKWDPRDYANITQIRVAPEKVWLPDIVLFNNADGNYEVSFMCNVLILSTGTVLWV 154
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 255 LSWNAGXWGCSTWL-VXSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSWI 413
L W+ + T + V E++W PD+VL NA + + + G+V W+
Sbjct: 100 LKWDPRDYANITQIRVAPEKVWLPDIVLFNNADGNYEVSFMCNVLILSTGTVLWV 154
>U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine
receptor protein 11 protein.
Length = 461
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 303 SERLWRPDVVLLNAAATT-AGDYALRARVSNNGSVSWI 413
S+ +W+PDV+L N+AA + + G+V WI
Sbjct: 106 SDHIWKPDVLLYNSAAEDFDSTFKSNLLTYHTGTVVWI 143
>Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical
protein C31H5.3 protein.
Length = 554
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 255 LSWNAGXWG-CSTWLVXSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 413
L+W+ +G + +W+PDV+L N+ + + A V G+V+WI
Sbjct: 86 LTWDPSEFGNIKEVRLPINNIWKPDVLLYNSVDQQFDSTWPVNAVVLYTGNVTWI 140
>Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical
protein T08G11.5 protein.
Length = 493
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 255 LSWNAGXWGCSTWL-VXSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSWI 413
+ WN +G + V +++W PD+VL NA + +++ G + W+
Sbjct: 92 MKWNPVNYGEIKQIRVSPDKVWLPDIVLFNNADGNYEVSFMCNVVINHKGDMLWV 146
>X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 493
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 255 LSWNAGXWGCSTWL-VXSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSWI 413
+ WN +G + V +++W PD+VL NA + +++ G + W+
Sbjct: 92 MKWNPVNYGEIKQIRVSPDKVWLPDIVLFNNADGNYEVSFMCNVVINHKGDMLWV 146
>U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit precursor
protein.
Length = 493
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 255 LSWNAGXWGCSTWL-VXSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSWI 413
+ WN +G + V +++W PD+VL NA + +++ G + W+
Sbjct: 92 MKWNPVNYGEIKQIRVSPDKVWLPDIVLFNNADGNYEVSFMCNVVINHKGDMLWV 146
>AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine
receptor (63.2 kD)(acr-19) protein.
Length = 554
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 255 LSWNAGXWG-CSTWLVXSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 413
L+W+ +G + +W+PDV+L N+ + + A V G+V+WI
Sbjct: 86 LTWDPSEFGNIKEVRLPINNIWKPDVLLYNSVDQQFDSTWPVNAVVLYTGNVTWI 140
>Z78546-2|CAB01770.1| 176|Caenorhabditis elegans Hypothetical
protein T21H8.5 protein.
Length = 176
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 111 PRNVRSGVSPRLQNRSQPDPAFETC*HS*VRVHRADTGRSSNELDRQTLS 260
P +RS SPR+ + A + + + AD RSS E++RQ +S
Sbjct: 55 PPALRSTFSPRIMENGHSNLAHKQHINDDIDNGNADDERSSREINRQWIS 104
>Y08637-1|CAA69927.1| 487|Caenorhabditis elegans nicotinic
acetylcholine receptorsubunit ACR-3 protein.
Length = 487
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 279 GCSTWLVXSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSWI 413
G T V +++W PD+VL NA + V + G + W+
Sbjct: 97 GIKTIRVPPDKVWLPDIVLFNNADGNYLVSFYSNVVVEHTGDMLWV 142
>U23525-2|AAK71378.1| 487|Caenorhabditis elegans Acetylcholine
receptor protein 3 protein.
Length = 487
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 279 GCSTWLVXSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSWI 413
G T V +++W PD+VL NA + V + G + W+
Sbjct: 97 GIKTIRVPPDKVWLPDIVLFNNADGNYLVSFYSNVVVEHTGDMLWV 142
>AC006808-1|AAF60813.1| 486|Caenorhabditis elegans Hypothetical
protein Y58G8A.1 protein.
Length = 486
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = +3
Query: 255 LSWNAGXWGCSTWLVXSERLWRPDVVLLNAAATTAGDY---ALRARVSNNGSV 404
L W ST + S +LW+P + L N+A + L A V N G V
Sbjct: 88 LKWERKATNISTLSIASSKLWQPALQLYNSARGNSWSLYLTGLPAIVYNTGKV 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,475,972
Number of Sequences: 27780
Number of extensions: 212915
Number of successful extensions: 648
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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