Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060165.seq
(460 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P... 29 2.0
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P... 29 2.0
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id... 28 2.6
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id... 28 2.6
At1g12980.1 68414.m01507 AP2 domain-containing transcription fac... 28 2.6
At3g62780.1 68416.m07053 C2 domain-containing protein contains s... 27 6.1
At2g36190.1 68415.m04442 beta-fructosidase, putative / beta-fruc... 27 6.1
At5g44470.1 68418.m05449 hypothetical protein 27 8.1
>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 25 LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHV 186
+ P + C +AA+ E T M+ S L + ++ DS++V LTL +H+
Sbjct: 76 MAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVVTALTLLKKHL 126
>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 25 LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHV 186
+ P + C +AA+ E T M+ S L + ++ DS++V LTL +H+
Sbjct: 76 MAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVVTALTLLKKHL 126
>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 273
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 25 LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHV 186
+ P + C +AA+ E T M+ S L + ++ DS+++ LTL +H+
Sbjct: 76 MAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVITALTLLKKHL 126
>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 267
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 25 LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHV 186
+ P + C +AA+ E T M+ S L + ++ DS+++ LTL +H+
Sbjct: 76 MAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVITALTLLKKHL 126
>At1g12980.1 68414.m01507 AP2 domain-containing transcription
factor, putative / enhancer of shoot regeneration (ESR1)
similar to gb|D38124 EREBP-3 from Nicotiana tabacum and
contains PF|00847 AP2 domain; identical to cDNA enhancer
of shoot regeneration ESR1 GI:18028939, enhancer of
shoot regeneration ESR1 [Arabidopsis thaliana]
GI:18028940
Length = 328
Score = 28.3 bits (60), Expect = 2.6
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = -3
Query: 293 PSAAAPXPCVPTQRLSIQFI*RSASIRTVDSDSRMLTCLKCRVRLTTILES--GGDSRSY 120
PSA P P +P + F A+ R ++ S L C R TT + G S SY
Sbjct: 134 PSARCPLPSLPLDSSTQNFYGAPAAQRIYNTQSIFLRDASCSSRKTTPYNNSFNGSSSSY 193
Query: 119 VARSESIMRDSD 84
A + + S+
Sbjct: 194 SASKTACVSYSE 205
>At3g62780.1 68416.m07053 C2 domain-containing protein contains
similarity to shock protein SRC2 [Glycine max]
gi|2055230|dbj|BAA19769 ; contains Pfam profile
PF00168:C2 domain
Length = 298
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -3
Query: 386 YTGAXSVVPGGGCSR-V*QYHVRPPQAFR 303
+TG V GGGCSR Q VRP +R
Sbjct: 134 FTGPVEVPTGGGCSRYAAQAPVRPVSTYR 162
>At2g36190.1 68415.m04442 beta-fructosidase, putative /
beta-fructofuranosidase, putative similar to
beta-fructofuranosidase GI:18324 from [Daucus carota]
Length = 591
Score = 27.1 bits (57), Expect = 6.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 437 WSANVQALYPGDGPVIRYTG 378
WS ++ + PG GP+I YTG
Sbjct: 123 WSGSI-TIVPGKGPIILYTG 141
>At5g44470.1 68418.m05449 hypothetical protein
Length = 108
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 190 IRESESTVRILADLQMNWIDKR*VGTQGXGAAALGWCXRNACG 318
I +E+ + + D + WI+ QG + LGW RN+ G
Sbjct: 2 IEVTEAVEQAVIDTR-EWIENIATSEQGTSGSGLGWIIRNSHG 43
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,017,207
Number of Sequences: 28952
Number of extensions: 202902
Number of successful extensions: 558
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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