Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060164.seq
(575 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 42 9e-05
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 41 1e-04
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 39 5e-04
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 33 0.030
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.21
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.28
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.28
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 29 0.49
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 29 0.49
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 29 0.64
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 28 0.85
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 28 0.85
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 1.1
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 28 1.1
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo... 27 2.0
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom... 24 2.2
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 27 2.6
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 2.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 3.4
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 26 3.4
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 3.4
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 3.4
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 4.5
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 4.5
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 25 6.0
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 7.9
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 7.9
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 25 7.9
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 7.9
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 41.5 bits (93), Expect = 9e-05
Identities = 30/105 (28%), Positives = 37/105 (35%), Gaps = 2/105 (1%)
Frame = +1
Query: 184 HHSPLYNILLLSXAPXRGTRVDTATNVVVNAPYPT--QGVPYPATHGAPYPTTQGAPYPT 357
HH P + P T T N VN Y G P+TH P A T
Sbjct: 134 HHQPAQTTT--TSIPTSATDNYTTVNGNVNQSYSKGIDGTALPSTHANPVAAPSTA---T 188
Query: 358 TQGAPYPTTQGLPYPVAQSVPYPVAQSAPYPVAQNAPYPTTQGAP 492
TQ P T + + P ++ VA+N PYP Q P
Sbjct: 189 TQHTQLPKTSAVSHQKPHEAPSTAVKAPTATVAENEPYPKPQSVP 233
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 40.7 bits (91), Expect = 1e-04
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Frame = +1
Query: 283 PTQGVPYPATHGAPYPTTQGAPYPTTQGAPYPTTQGLPYPVAQSVPYPVAQS--APYPVA 456
P P+P H YP P + GA P PYP P Q+ APY
Sbjct: 175 PPHHPPHPHFHNNNYPPPYCFQSPVSPGATVPLQHHSPYPSDNGFPGHRRQTHFAPYYYP 234
Query: 457 QNAPYPTTQGAP-YLRTHV 510
Q A P+ + P YL THV
Sbjct: 235 QRATSPSLKQVPTYLGTHV 253
Score = 34.7 bits (76), Expect = 0.010
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = +1
Query: 322 PYPTTQGAPYPTTQGA---PYPTTQGLPYPVAQSVPYPVAQSAPYPVAQNAPYPTTQGAP 492
P+P TQ +P T+ P+P YP PV+ A P+ ++PYP+ G P
Sbjct: 162 PFPPTQHH-HPHTRPPHHPPHPHFHNNNYPPPYCFQSPVSPGATVPLQHHSPYPSDNGFP 220
Query: 493 YLRTHVRLTQFHH 531
R +++
Sbjct: 221 GHRRQTHFAPYYY 233
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 39.1 bits (87), Expect = 5e-04
Identities = 31/103 (30%), Positives = 39/103 (37%), Gaps = 11/103 (10%)
Frame = +1
Query: 217 SXAPXRGTRVDTATNVVVNAPYPTQGVPYPATHG---APYPTTQGAPYPTTQGA--PYPT 381
S AP V ++ + + P P+ P PA G P P+ P P A P P
Sbjct: 1057 SGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPA 1116
Query: 382 TQG---LPYPVAQSVPYPVAQSA---PYPVAQNAPYPTTQGAP 492
G +P P + P PV A P P P P GAP
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAP 1159
Score = 35.9 bits (79), Expect = 0.004
Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Frame = +1
Query: 268 VNAPYPTQGVPYPATHGAPYPTTQGA---PYPTTQGAPYPTTQG---LPYPVAQSVPYPV 429
V AP VP P+ P P GA P P+ P P G +P P + P P
Sbjct: 1114 VPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPA 1173
Query: 430 AQS----APYPVAQNAPYPTTQGAP 492
S P P A P P AP
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAP 1198
Score = 32.7 bits (71), Expect = 0.040
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Frame = +1
Query: 277 PYPTQGVPYP-ATHGA-------PYPTTQGAPYPTTQGA-PYPTTQGLPYPVAQSVPYPV 429
P PT P P ++ GA P P+++ P GA P P G+P PV + P
Sbjct: 1044 PIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIP-PVPK--PSVA 1100
Query: 430 AQSAPYPVAQNAPYPTTQGAP 492
A P P P P GAP
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAP 1121
Score = 26.6 bits (56), Expect = 2.6
Identities = 19/66 (28%), Positives = 24/66 (36%)
Frame = +1
Query: 295 VPYPATHGAPYPTTQGAPYPTTQGAPYPTTQGLPYPVAQSVPYPVAQSAPYPVAQNAPYP 474
VP P+ P P AP P PT+ P P + S P P ++ P
Sbjct: 1024 VPLPSADAPPIPVPSTAP-----PVPIPTSTP-PVPKSSSGAPSAPPPVPAPSSEIPSIP 1077
Query: 475 TTQGAP 492
GAP
Sbjct: 1078 APSGAP 1083
Score = 26.2 bits (55), Expect = 3.4
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Frame = +1
Query: 304 PATHGAPYPTTQGAPYPTTQGAPYPTTQGLPY--PVAQSVPYPVAQSAPYPVAQNAP 468
P H P ++ P T+ AP +P A VP P A + P PV AP
Sbjct: 987 PKDHPPSAPLSK--PVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAP 1041
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 33.1 bits (72), Expect = 0.030
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 256 TNVVVNAPYPTQGVPYPATHGAPYPTTQGAPYPTTQGAPYPTTQGLPYPVAQSVPYPVAQ 435
T +++ +P+ Y + HG P+ TTQ A P +PTT Y V++ VA
Sbjct: 47 TGLLMGSPFVQSPTSYTSMHGLPFSTTQMAAAPA-----HPTT---GYNVSRVTSPNVAN 98
Query: 436 SAP--YPVAQNAPYP 474
AP +P+ N P
Sbjct: 99 FAPGYFPLPNNTTQP 113
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.3 bits (65), Expect = 0.21
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Frame = +1
Query: 283 PTQGVPYPATHGAPYPTTQGAPYPTTQGAPYPTTQGLPYPVAQSVPYPVAQSAPY----- 447
PT P P+ P P+ AP P AP P LP P + P SAP
Sbjct: 140 PTSAPPRPSI---PPPSPASAP-PIPSKAP-PIPSSLPPPAQPAAPVKSPPSAPSLPSAV 194
Query: 448 -PVAQNAPYPTTQGAPYLRTHVRLTQF 525
P+ P P AP T R + F
Sbjct: 195 PPMPPKVPPPPLSQAPVANTSSRPSSF 221
Score = 27.9 bits (59), Expect = 1.1
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = +1
Query: 274 APYPTQGVPYPATHGAPYPTTQGAPYPTTQGAPYPTTQGLPYPVAQSVPYPVAQSAPYPV 453
AP Q P T P P+ P P+ AP P P P+ S+P P +AP
Sbjct: 129 APPTPQSELRPPTSAPPRPSI---PPPSPASAP-PIPSKAP-PIPSSLPPPAQPAAPVKS 183
Query: 454 AQNAP 468
+AP
Sbjct: 184 PPSAP 188
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.28
Identities = 23/81 (28%), Positives = 26/81 (32%)
Frame = +1
Query: 226 PXRGTRVDTATNVVVNAPYPTQGVPYPATHGAPYPTTQGAPYPTTQGAPYPTTQGLPYPV 405
P G T+T V P P AP GAP P LP +
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM 463
Query: 406 AQSVPYPVAQSAPYPVAQNAP 468
+ P P A AP P AP
Sbjct: 464 PAAPPLPPAAPAPPPAPAPAP 484
Score = 29.5 bits (63), Expect = 0.37
Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Frame = +1
Query: 286 TQGVPYPAT--HGAPYPTTQGAPYPTTQGAPYPTTQGLPYPVAQSVPYPVAQSAPYPVAQ 459
T VP P + AP AP GAP P+A +P + + P P A
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAA 473
Query: 460 NAPYPTTQGAP 492
AP P AP
Sbjct: 474 PAPPPAPAPAP 484
Score = 27.9 bits (59), Expect = 1.1
Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Frame = +1
Query: 250 TATNVVVNAPYPTQGVPYPATHGAP----YPTTQGAPYPTTQGAPYPTTQGLPYPVAQSV 417
+++ V N P P +P + P T P PT P LP S+
Sbjct: 380 SSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSL 439
Query: 418 PYPVAQSAPYPVAQNAPYPTTQGAP 492
P + P P + P G P
Sbjct: 440 PMGAPAAPPLPPSAPIAPPLPAGMP 464
Score = 25.4 bits (53), Expect = 6.0
Identities = 23/81 (28%), Positives = 27/81 (33%)
Frame = +1
Query: 271 NAPYPTQGVPYPATHGAPYPTTQGAPYPTTQGAPYPTTQGLPYPVAQSVPYPVAQSAPYP 450
+AP P+ + PA P P P A P P P P P A P
Sbjct: 434 SAP-PSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAA-----P 487
Query: 451 VAQNAPYPTTQGAPYLRTHVR 513
VA A P G L +R
Sbjct: 488 VASIAELPQQDGRANLMASIR 508
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.28
Identities = 29/124 (23%), Positives = 42/124 (33%), Gaps = 1/124 (0%)
Frame = +1
Query: 151 LVKNSTRCLVNHHSPLYNILLLSXAPXRGTRVDTATNVVVNAPYPTQGVPYPATHGAPYP 330
L ST C + P P T T+T+ + P P T+ P P
Sbjct: 108 LPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSST-SIPIPPTSTSSTDTNSNPLP 166
Query: 331 TTQGAPYPTTQGAPYPTTQGLPYPVAQSVPYPVAQSAPYPVAQNAPYPT-TQGAPYLRTH 507
TT + +T P + L P+ +VP S P+ + T T +P T
Sbjct: 167 TTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTS 226
Query: 508 VRLT 519
T
Sbjct: 227 TSCT 230
Score = 26.6 bits (56), Expect = 2.6
Identities = 17/89 (19%), Positives = 32/89 (35%)
Frame = +1
Query: 238 TRVDTATNVVVNAPYPTQGVPYPATHGAPYPTTQGAPYPTTQGAPYPTTQGLPYPVAQSV 417
T +T ++ + T + +P P+T + +T P + L P+ +V
Sbjct: 79 TDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTV 138
Query: 418 PYPVAQSAPYPVAQNAPYPTTQGAPYLRT 504
P S P+ + T + L T
Sbjct: 139 PPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 29.1 bits (62), Expect = 0.49
Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Frame = +1
Query: 283 PTQGVPYPATHGAPYPTTQGAPYPTTQGAPYPTTQGLPYPVAQSVPYPVA-QSAPYPVAQ 459
P +G+ P + P P+ + P T A P P A Q+ Y A
Sbjct: 41 PVRGLTIPPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAP 100
Query: 460 NAPYPTTQGAP 492
PYP G P
Sbjct: 101 Q-PYPPQGGYP 110
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 29.1 bits (62), Expect = 0.49
Identities = 34/106 (32%), Positives = 40/106 (37%), Gaps = 16/106 (15%)
Frame = +1
Query: 211 LLSXAPXRGTRVDTATNVVVNAPYPTQGVPYPATHGAPYPTTQ---GAP----------Y 351
L + P G T V V PYPT V T G P T GAP
Sbjct: 254 LTTTVPHSGNETGPTT-VYVETPYPTT-VTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEV 311
Query: 352 PTTQGAPYPT-TQGLP--YPVAQSVPYPVAQSAPYPVAQNAPYPTT 480
PTT Y T T G + +VP+ ++ P V PYPTT
Sbjct: 312 PTTTNYGYTTVTTGYTGSTTLTTTVPHSGNETGPTTVYVETPYPTT 357
Score = 29.1 bits (62), Expect = 0.49
Identities = 34/106 (32%), Positives = 40/106 (37%), Gaps = 16/106 (15%)
Frame = +1
Query: 211 LLSXAPXRGTRVDTATNVVVNAPYPTQGVPYPATHGAPYPTTQ---GAP----------Y 351
L + P G T V V PYPT V T G P T GAP
Sbjct: 332 LTTTVPHSGNETGPTT-VYVETPYPTT-VTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEV 389
Query: 352 PTTQGAPYPT-TQGLP--YPVAQSVPYPVAQSAPYPVAQNAPYPTT 480
PTT Y T T G + +VP+ ++ P V PYPTT
Sbjct: 390 PTTTNYGYTTVTTGYTGSTTLTTTVPHSGNETGPTTVYVETPYPTT 435
Score = 29.1 bits (62), Expect = 0.49
Identities = 34/106 (32%), Positives = 40/106 (37%), Gaps = 16/106 (15%)
Frame = +1
Query: 211 LLSXAPXRGTRVDTATNVVVNAPYPTQGVPYPATHGAPYPTTQ---GAP----------Y 351
L + P G T V V PYPT V T G P T GAP
Sbjct: 410 LTTTVPHSGNETGPTT-VYVETPYPTT-VTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEI 467
Query: 352 PTTQGAPYPT-TQGLP--YPVAQSVPYPVAQSAPYPVAQNAPYPTT 480
PTT Y T T G + +VP+ ++ P V PYPTT
Sbjct: 468 PTTTNYGYTTITTGYTGSTTLTTTVPHSGNETGPTTVYVETPYPTT 513
Score = 29.1 bits (62), Expect = 0.49
Identities = 34/106 (32%), Positives = 40/106 (37%), Gaps = 16/106 (15%)
Frame = +1
Query: 211 LLSXAPXRGTRVDTATNVVVNAPYPTQGVPYPATHGAPYPTTQ---GAP----------Y 351
L + P G T V V PYPT V T G P T GAP
Sbjct: 488 LTTTVPHSGNETGPTT-VYVETPYPTT-VTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEV 545
Query: 352 PTTQGAPYPT-TQGLP--YPVAQSVPYPVAQSAPYPVAQNAPYPTT 480
PTT Y T T G + +VP+ ++ P V PYPTT
Sbjct: 546 PTTTNYGYTTITTGYTGSTTLTTTVPHSGNETGPTTVYVETPYPTT 591
Score = 29.1 bits (62), Expect = 0.49
Identities = 34/106 (32%), Positives = 40/106 (37%), Gaps = 16/106 (15%)
Frame = +1
Query: 211 LLSXAPXRGTRVDTATNVVVNAPYPTQGVPYPATHGAPYPTTQ---GAP----------Y 351
L + P G T V V PYPT V T G P T GAP
Sbjct: 566 LTTTVPHSGNETGPTT-VYVETPYPTT-VTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEV 623
Query: 352 PTTQGAPYPT-TQGLP--YPVAQSVPYPVAQSAPYPVAQNAPYPTT 480
PTT Y T T G + +VP+ ++ P V PYPTT
Sbjct: 624 PTTTNYGYTTVTTGYTGSTTLTTTVPHSGNETGPTTVYVETPYPTT 669
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 28.7 bits (61), Expect = 0.64
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +1
Query: 322 PYPTTQGAPYPTTQGAPYPTTQGLPYPVAQSVPYPVAQSAPYP 450
P+PT G P QG P PT LP+ QS P Q + +P
Sbjct: 218 PFPTQAGLP---NQGFPMPTGSQLPFSNQQS-SQPSMQYSSHP 256
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 28.3 bits (60), Expect = 0.85
Identities = 22/73 (30%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Frame = +1
Query: 280 YPTQGVPYPATHGAPYPTTQGAPYPTTQ--GAPYPTTQGLPYPVAQSVPYPVAQSAPYPV 453
YP + G P T A P GAP G AQ+V A APY V
Sbjct: 140 YPNAPAQFVPPGGLPLGTPLDASTPAVPYYGAPDQQQMGQRPEFAQNVSQGFAGQAPYNV 199
Query: 454 AQNAPYPTTQGAP 492
P+ Q P
Sbjct: 200 RPGYGMPSNQKPP 212
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 0.85
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +1
Query: 358 TQGAPYP-TTQGLPYPVAQSVPYPVAQSAPYPVAQNAPYPTTQGAP 492
T +P P T LP P +VP A + P V + PTT P
Sbjct: 421 TNASPAPLVTPSLPVPSIPAVPGMEAMAMPPGVTSSIAVPTTSSMP 466
Score = 27.9 bits (59), Expect = 1.1
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = +1
Query: 334 TQGAPYP-TTQGAPYPTTQGLPYPVAQSVPYPVAQSAPYPVAQNAP---YPTTQGAP 492
T +P P T P P+ +P A ++P V S P + P PT GAP
Sbjct: 421 TNASPAPLVTPSLPVPSIPAVPGMEAMAMPPGVTSSIAVPTTSSMPLQGMPTMFGAP 477
Score = 27.1 bits (57), Expect = 2.0
Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Frame = +1
Query: 274 APYPTQGVPYPATHGAPYPTTQGAPYPTTQGAPYPTTQGLPYPVAQSVPYPVAQSAPYPV 453
AP T +P P+ P P T PTT +P ++ SAP
Sbjct: 426 APLVTPSLPVPSIPAVPGMEAMAMPPGVTSSIAVPTTSSMPLQGMPTMFGAPGVSAPGTE 485
Query: 454 AQNAPYP--TTQGA-PY 495
A P TT G PY
Sbjct: 486 APGTGTPGLTTPGVDPY 502
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.9 bits (59), Expect = 1.1
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = +1
Query: 310 THGAPYPTTQGAPYPTTQGAPYPTTQGLPYPVAQSVPYP-VAQSAPYPVAQNAPYPTTQG 486
T P+ Q P P QG+ P +P P+ P V +P P Q T+Q
Sbjct: 335 TTTTPFAGNQVMPTPQVQGSRPPPPPPMPAPIYNVPNVPTVPTVSPNPFLQPTFSGTSQA 394
Query: 487 APYLRTHVRLTQFHH 531
+ + H + F++
Sbjct: 395 SAHPSIHSQSATFNN 409
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.9 bits (59), Expect = 1.1
Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Frame = +1
Query: 289 QGVPYPATHGAPYPTTQGAPYPTTQGAPYPTTQGL----PYPVAQSVPYPVAQSAPYP-V 453
+G+P H P P G P G P P G+ P P AQ P + S P
Sbjct: 498 RGMPMVPGHNGPMPMYPGMPTQFPAGGPAPGYPGMNARGPVP-AQGRPMMMPGSVPSAGP 556
Query: 454 AQNAPYPTTQGAP 492
A+ P G P
Sbjct: 557 AEAEAVPAVPGMP 569
>SPAC23H3.02c |ini1||RING finger-like protein
Ini1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +3
Query: 387 GSTIPSCSECAIPGCSECAISGCSECAIP--DNAGC 488
GS+ C C PG S+C CSEC D GC
Sbjct: 52 GSSQDRCIICGAPGVSDCYY--CSECTRMEYDRDGC 85
>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 24.2 bits (50), Expect(2) = 2.2
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3
Query: 408 SNWVW*TLSCRVW 370
+NW W + CRVW
Sbjct: 9 NNWHWTSKDCRVW 21
Score = 21.0 bits (42), Expect(2) = 2.2
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -3
Query: 372 WRTLSCRVWS 343
W + CRVWS
Sbjct: 13 WTSKDCRVWS 22
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 2.6
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +1
Query: 328 PTTQGAPYPTTQGAPYPTTQGLPYPVAQSVPYPVAQSAPYPVA 456
PTT G Y PYP Q + + VP VAQ A P A
Sbjct: 23 PTTSGIVYNMFPACPYPHVQNPAFHGSVDVP-QVAQKAFDPQA 64
Score = 25.4 bits (53), Expect = 6.0
Identities = 19/63 (30%), Positives = 24/63 (38%)
Frame = +1
Query: 304 PATHGAPYPTTQGAPYPTTQGAPYPTTQGLPYPVAQSVPYPVAQSAPYPVAQNAPYPTTQ 483
P T G Y PYP Q + + +P VAQ P Q+A + N PT
Sbjct: 23 PTTSGIVYNMFPACPYPHVQNPAFHGSVDVP-QVAQKAFDP--QAATVSESANVSRPTPA 79
Query: 484 GAP 492
P
Sbjct: 80 PVP 82
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 26.6 bits (56), Expect = 2.6
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 298 PYPATHGAPYPTTQGAPYPTTQGAPYPTTQGLPYPVAQSVPYPVAQSAPYPVAQNAPYP 474
P +H APY +T A +++G+ P + +P A+ P A + P P A P
Sbjct: 273 PMYGSHAAPYASTPSAAVGSSRGST-PASATVPISPARGFPTTSAYN-PAPPAYGMANP 329
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 3.4
Identities = 19/57 (33%), Positives = 21/57 (36%)
Frame = +1
Query: 271 NAPYPTQGVPYPATHGAPYPTTQGAPYPTTQGAPYPTTQGLPYPVAQSVPYPVAQSA 441
+A P P P P AP P G P LP A SVP P +SA
Sbjct: 1696 SAAPPQMSAPTPPPPPMSVPPPPSAP-PMPAGPPSAPPPPLPASSAPSVPNPGDRSA 1751
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 26.2 bits (55), Expect = 3.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -2
Query: 508 RAFSGMVHPALSGMAHSEQPDMAHSEQPGMAHSEQLGMVDPELS 377
RAFS ++HP SG+ + + G A ++ L + PEL+
Sbjct: 35 RAFSSVLHPFTSGLDEKASGTASKDRKSGRAGTKSL--LTPELT 76
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.2 bits (55), Expect = 3.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 364 GAPYPTTQGLPYPVAQSVPYPVAQSAPYPVAQNAPYPT 477
G P PT++ P+P + A P PV QN P T
Sbjct: 961 GLP-PTSKSKPFPRLATGGSTAAARGPRPVVQNKPAAT 997
Score = 25.0 bits (52), Expect = 7.9
Identities = 20/61 (32%), Positives = 23/61 (37%)
Frame = +1
Query: 262 VVVNAPYPTQGVPYPATHGAPYPTTQGAPYPTTQGAPYPTTQGLPYPVAQSVPYPVAQSA 441
VV N P T+ V PA P P P T Q T P P Q+ P +A
Sbjct: 989 VVQNKPAATKPVSMPAAKSKPAPMAN--PVSTAQ----QTQNRPPAPAMQARPNTTQAAA 1042
Query: 442 P 444
P
Sbjct: 1043 P 1043
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 3.4
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 331 TTQGAPYPTTQGAPYPTTQGLPYPVAQSVPYPVAQSAPYPVAQNA-PYPTTQGAP 492
TT+ A Q A +P +P P A +V PVA AP A A P P AP
Sbjct: 352 TTEAAAAQYPQAA-FPPPPVMPQPAAAAVTTPVA--APVAAAAAAVPVPPPAPAP 403
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.8 bits (54), Expect = 4.5
Identities = 18/74 (24%), Positives = 24/74 (32%)
Frame = +1
Query: 247 DTATNVVVNAPYPTQGVPYPATHGAPYPTTQGAPYPTTQGAPYPTTQGLPYPVAQSVPYP 426
D + AP T P T A P AP P AP P + +
Sbjct: 95 DEVADEPAEAPASTSSTPKVETAAAAAPAATPAPAPAQTSAPAAALPDEPPKALEVLHTL 154
Query: 427 VAQSAPYPVAQNAP 468
VAQ + + +P
Sbjct: 155 VAQKLKKSIEEVSP 168
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 4.5
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +3
Query: 321 AIPDNSGCSIPDNSGCAIPD---NSGSTIPSCSECAIPGCSECAISGCSECAIPDNAGCT 491
++ ++ SIP +S A +S S IPS S + S AIS S + ++ T
Sbjct: 13 SLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFT 72
Query: 492 IPENA 506
P ++
Sbjct: 73 SPASS 77
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 4.5
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Frame = +1
Query: 292 GVPYPATHGAPYPTTQ-----GAPYPTTQGAPYPTTQGLPYPVAQSVPYPVAQSA 441
GV Y + +GA Y +Q G+ P T TT P P + P P SA
Sbjct: 904 GVDYLSCNGACYNPSQYVCSDGSLSPNTVTTTKATTTFTPTPTTTTTPTPTTTSA 958
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 6.0
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +1
Query: 424 PVAQSAPYPVAQNAPYPTTQGAPYLRTHVRLTQFHHGV---GGYF 549
P+A A + QN P+ +G+ + + +HHG GG++
Sbjct: 410 PIAYPARLSIPQNVFSPSVRGSIHPEYDLNAVVYHHGTSASGGHY 454
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 378 RVWRTLSCRVWSTLSCR-VWRTVSCRVWH 295
++WR + + W +CR + VSC ++H
Sbjct: 237 KLWRMTASKAWEVDTCRGHFNNVSCCLFH 265
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 7.9
Identities = 17/68 (25%), Positives = 24/68 (35%)
Frame = +3
Query: 333 NSGCSIPDNSGCAIPDNSGSTIPSCSECAIPGCSECAISGCSECAIPDNAGCTIPENARA 512
+S CS D+S P SC P C GC C+ + C+ + +
Sbjct: 223 SSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGC--CSTEKTSCCSQEKKSCC 280
Query: 513 PYPVPSWC 536
PS C
Sbjct: 281 TSEKPSCC 288
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +1
Query: 313 HGAPYPTTQGAPYPTTQGAPYPTTQGLPYPVAQSVPYPVAQSAP 444
H AP P T+ AP+P T G P A P + P
Sbjct: 417 HSAP-PVTKSAPFPVVSPLQLNHTPGFPTSPAAKPNSPTSTFFP 459
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect = 7.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 211 LLSXAPXRGTRVDTATNVVVNAPYPTQGVPYPATHGAPYPTTQGAPYP 354
L S P T+ + + N+ + P TQG + + HG + +P P
Sbjct: 174 LSSSLPSLTTKSNLSGNLNMVTPASTQGPAFSSKHGFSNALSTASPIP 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,218
Number of Sequences: 5004
Number of extensions: 53083
Number of successful extensions: 256
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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