Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060164.seq
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.31 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   3.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   6.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +1

Query: 283 PTQGVP--YPATHGAPYPTTQGAPYPTTQGAPYPTTQGLP 396
           P+ G P   P+ H +P    +G+P   +QG P     G P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 420 WHTLSNWVW*TLSCRVWRTLSCRVW 346
           W     W++  L C +W  L+  VW
Sbjct: 125 WEVFKVWIFGDLWCSIW--LAVDVW 147


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 430 QPGMAHSEQLGMVDPE 383
           QPGM+  E LG+  P+
Sbjct: 467 QPGMSFGEPLGLRRPQ 482


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 522 VPSWCRRIL 548
           VP+WC R+L
Sbjct: 337 VPAWCDRVL 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,764
Number of Sequences: 438
Number of extensions: 4587
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)